Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01234 ATGGCGGGGTTATTCTCATTAGGTGGAGGAGGGCGAGGAGGCGATAACCAAGAAGAAAACAACAACCAAAGCAGCGAGATTCCACCAGCGGAGACCCTATTCTGGTACAGCAAAAACGACGACGTTTCATCCTATCACCGAGGGTTTGAGCTATGGAACCAGCATCAGGAGCACCAGCACCATCACCACGCGATGCATCATCCACATGCGCGTCCACTCCTGCAGCGAGATCTTTACTCCTCCGGAGTGGGACCCAGCCGCGGCGGCATCTCCGATGATCACTCGTCGTCGAGATCGGCGGCGTTCGTGGCGATGCGCGCAGCCGGGGCCGAGGGAGGAGGAATAAGCTGTCAGGATTGCGGCAACCAGGCCAAAAAAGACTGCCCTCACATGCGGTGCAGGACGTGCTGCAAGAGCCGCGGCTATGACTGCCAAACCCATGTGAAAAGCACATGGGTTCCGGCTTCTAAACGCCGTGAGCGCCAACAGCAGCTCATGGCGTTACATCAGCAACAGCAAGAACAACAACAACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAGGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAATTCAGATGCGTGAGGGTTAGCTGCGTGGAGGACTCTGATGATAGATACGCATACCAAACCGCTGTGAGCATTGGAGGACATGTGTTCAAAGGAATCCTCTATGACTATGGTCCTGAGAATAGTAACAACAACAACAGTAATAATAATAGTAATAATTACATGGCTGGAGAAACCTCTGCTGTTGCTGCAACAGCTCAGCCCTTGAACCTTGCTGCTGCTGCTTCTTCAGCTGCACTTATTGATCCTTCGTCTTTGTATTCAGCTCCGGCTAACGCATTCATGGCTGGTAGTGGTACGCAATTCTTCCCTCACACAAGATCTTGA 954 0.5252 MAGLFSLGGGGRGGDNQEENNNQSSEIPPAETLFWYSKNDDVSSYHRGFELWNQHQEHQHHHHAMHHPHARPLLQRDLYSSGVGPSRGGISDDHSSSRSAAFVAMRAAGAEGGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQQLMALHQQQQEQQQQRDISKRPRDSRLSSSGLEEEGHFPSVVSSPAEFRCVRVSCVEDSDDRYAYQTAVSIGGHVFKGILYDYGPENSNNNNSNNNSNNYMAGETSAVAATAQPLNLAAAASSAALIDPSSLYSAPANAFMAGSGTQFFPHTRS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01234 317 PANTHER PROTEIN SHORT INTERNODES 1 315 - -
Gma16g01234 317 MobiDBLite consensus disorder prediction 155 201 - -
Gma16g01234 317 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 200 248 IPR006511 -
Gma16g01234 317 MobiDBLite consensus disorder prediction 15 29 - -
Gma16g01234 317 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 116 158 IPR006510 -
Gma16g01234 317 Coils Coil 159 179 - -
Gma16g01234 317 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 315 IPR007818 GO:0003700|GO:0006355
Gma16g01234 317 Pfam Domain of unknown function (DUF702) 114 249 - -
Gma16g01234 317 MobiDBLite consensus disorder prediction 1 29 - -
Gma16g01234 317 MobiDBLite consensus disorder prediction 179 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01234 Gma-Chr16 30376485 30378109 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gma16g01234 DUF702 9.3e-64 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01234 16 30376485 30378109 Gma06g00081 06 737531 738502 ECH
Gma16g01234 16 30376485 30378109 Gma11g01036 11 8782079 8783164 ECH
Gma16g01234 16 30376485 30378109 Gma12g00349 12 2877924 2879038 ECH
Gma16g01234 16 30376485 30378109 Gma16g01234 16 30376485 30378109 ECH
Gma16g01234 16 30376485 30378109 Gma02g00474 02 4775357 4776971 GST