Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02616 ATGAGAATGTCTCCACAAAGTGTAGCTCTTCCATTTTTCATCACCATGTTTGTCTCATTTGGGGTTTGTTTTGGCTCTTTCCTAGAGGACACATATCATCTTACTAATTATCAACGTTACTCCATGAAGCCAAATAATGAACATTTTGGTATCATGACAAGGGCTTATGGATCTACCCCATCTACAAGGTCTCAAAGAAGGATTAATATTGATGACTATGGAGCCAAAGCTAGTGATGGAAGAGATGACACTGAGGCATTTGAGAAGGCATGGGATGAGGCATGTTCTACAGGGGGAATTCTTGTAGTTCCTGAAGAAAAGATATATCACTTAAAGCCAATAACTTTTTCAGGACCTTGCCTAACCAATACTGCCTTCAGGGTCTATGGAACAATCAAAGCATGGCCTAAAATGTCAACATACCAAAATGATAGACTACACTGGATTAAGTTTGAAAATGTCACAAATCTCAGAGTTGATGGGGGTGGCACTATCAATGGCAATGGGAGAAAATGGTGGGAAAACTCTTGCAAAAGGAATGAAAACCTTCCATGCAAACCTGCGCCAACTGCTGTGACTTTCTATCAATGCAACAACTTGAGAGTGACAAACCTGAGGTTCAAAAATGCACAGCAAATGCATATAAGGTTTCAAAAATGCAACAATGTTACAGCTTCGAATTTGATCGTGAGAGCACCGGGGAACAGCCCCAACACTGATGGAATTCACGTCACAGAGACACGAAATATTCTCATAAGCAATAGTATCATTGGGACAGGTGATGACTGTATTTCCATAGTAAGTGGGTCCCAAAATGTACGAGCCATAGATGTCAAGTGTGGACCAGGGCATGGAATCAGCATTGGAAGTTTAGGAGCTGGTGACTCTAAAGCTCAAGTGTCCAACGTGTTAGTGAACAGAGCCACCTTTACAGGAACGACTAATGGAGTTAGAATAAAGACTTGGCAGGGAGGTTCTGGCTATGCGAAAAATGTAAAATTTGTGAATATAACAATGCGAAATGTGACGAATCCCATAATTGTTGATCAAAACTACTGTGACCAGGACAAGCCATGCCATGAGAAGGACTCAGCAGTGAAATTGAGCAACATTGTATACCAAAACATCAGAGGAACAAGTGCTTCAGAAGTGGCAATCAAGTTTGACTGCAGCAAAACTGTTCCATGCAAAGGAATATACTTGCAAGATGTGATTTTAACACCAGAAGACCATGGTGGTGGTGGTAGTAGCACCATTGCTACATGTGAAAATGTTAGATATGTCCATCGGGGAAAGTTTTTTCCTCAATGCTCTACTTGA 1320 0.4106 MRMSPQSVALPFFITMFVSFGVCFGSFLEDTYHLTNYQRYSMKPNNEHFGIMTRAYGSTPSTRSQRRINIDDYGAKASDGRDDTEAFEKAWDEACSTGGILVVPEEKIYHLKPITFSGPCLTNTAFRVYGTIKAWPKMSTYQNDRLHWIKFENVTNLRVDGGGTINGNGRKWWENSCKRNENLPCKPAPTAVTFYQCNNLRVTNLRFKNAQQMHIRFQKCNNVTASNLIVRAPGNSPNTDGIHVTETRNILISNSIIGTGDDCISIVSGSQNVRAIDVKCGPGHGISIGSLGAGDSKAQVSNVLVNRATFTGTTNGVRIKTWQGGSGYAKNVKFVNITMRNVTNPIIVDQNYCDQDKPCHEKDSAVKLSNIVYQNIRGTSASEVAIKFDCSKTVPCKGIYLQDVILTPEDHGGGGSSTIATCENVRYVHRGKFFPQCST 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02616 439 ProSitePatterns Polygalacturonase active site. 277 290 IPR000743 GO:0004650|GO:0005975
Gma15g02616 439 Pfam Glycosyl hydrolases family 28 101 426 IPR000743 GO:0004650|GO:0005975
Gma15g02616 439 Gene3D - 53 434 IPR012334 -
Gma15g02616 439 SUPERFAMILY Pectin lyase-like 61 438 IPR011050 -
Gma15g02616 439 SMART pbh1 329 350 IPR006626 -
Gma15g02616 439 SMART pbh1 247 268 IPR006626 -
Gma15g02616 439 SMART pbh1 300 321 IPR006626 -
Gma15g02616 439 SMART pbh1 220 246 IPR006626 -
Gma15g02616 439 PANTHER POLYGALACTURONASE 41 438 - -
Gma15g02616 439 PANTHER - 41 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02616 Gma-Chr15 54490559 54495189 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00114 12 901480 904653 Gma15g02616 15 54490559 54495189 PCT
Gma13g01731 13 32525140 32526824 Gma15g02616 15 54490559 54495189 PCT
Gma15g02276 15 47669633 47671820 Gma15g02616 15 54490559 54495189 PCT