Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02425 ATGGCTTCACTGCTGAATACTGTGTCACCAGCCGCAAATTTATCTCACAAAACAAAAAGACCCACTTGTGGCGGTTTCTTGCACTCCCAGGTTCCAAATCTCCACACTTTTACCCTCCACAAGGGTTTTTCTAGGGTTTCGGCATCGACCCAGATTGCCATTTCCCCAAAAGATACCATTTTTAATCTCCCCAATTGGAGGATTGGGAGGAATGACCAAAAGGGTAAAGAGCTGAGGATCTATGATGCATTTCTGCATTTGGAGTATTTGGTGGGTAAGGGCCAAAAGCCTGAGGTAAATCAAGCGACTCAGCTTTTGTATGATCTTTGTAAATTCAACAAAGCTAGGAAAGCTGTTAGGGTGATGGAGATGATGGTTGGTTCAGGTATTATACCTGATGCAGCCTCTTACACACACTTGGTCAATTTTCTGTGCAAGAGGGGCAATGTTGGGTATGCAATTCAGTTGGTTGAGAAGATGGAGGGGCATGGCTTTCCAACTAATACTGTTACCTATAACACTCTTGTTAAAGGGCTTTGCATGCATGGGAACTTGAACCAGAGCTTGCAGCTTTTGGATAGGTTGACGAAGAAGGGACTCGTCCCAAATGCATTCACGTATTCGTTCCTTCTCGAAGCGGCATATAAGGAGAGGGGGGTGGATGAGGCCATGGAGCTTTTGGATGATATAATTGCCAAGGGTGGGGAGCCTAATTTGGTTAGTTACAATGTGTTGTTAACCGGGTTGTGCAAGGAAGGGAGAACTGAAGAAGCTATTAAGCTTTTCAGGGAATTGCCTGCGAAAGGGTTCAGTCCTAGTGTTGTGAGTTTCAACATTTTGCTGAGGAGTTTGTGCTATGAAGGGCGGTGGGAGGAAGCGAATGAGCTTCTGGCGGAGATGGATAAAGAGGATCAGCCTCCCTCGGTGGTCACTTACAACATATTGATTACTTCGCTTTCACTTCATGGAAGAACAGAACAAGCTTTCAAGGTTTTAGATGAAATGACGAGGAGTGGGTTCAAAGCGAGTGCTACTAGCTACAATCCAATCATTGCCCGCCTCTGCAATGAAGGGAAGGTGGATCTTGTTCTCCAGTGTCTAGACCAAATGATTCACCGACGCTGTCATCCTAATGAAGGAACGTACAGTGCTATCGCAATGCTGTGTGAGCAAGGTAAGGTGCAGGAGGCTTTCTTTATAATCCAAAGCTTGGGTAGTAAACAAAACTTCCCTATGCATGATTTTTACAAGAATTTGATAGCAAGCTTGTGTAGGAAAGGGAACACATATCCAGCCTTTCAGATGTTATATGAAATGATAAAGTATGGATTCACTCCAGATTCTTACACTTATTCATCTCTGATTAGAGGAATGTGTAGAGAGGGAATGCTAGATGAGGCTCTTAACATATTCAGGATTTTGGAAGAAAATGACCACAGACCCGATATTGATAACTACAACGCACTTATACTTGGTTTTTGCAAAGCTCAGAGAACAGACTTATCAATAGAGATATTTCTGATGATGGTTAACAAAGGATGTGTGCCTAATGAGAATACCTATACCATTCTTGTGGAAGGGCTTGCTTTTGAAGAGGAGACAGATATAGCGGCTGACCTGATGAAAGAGTTATATCTGAAAAAGGTTCTGAGCCAAAGTACTGTTGAAAGACTTTGTATGCAATACGACATCAAGGAATTAGTAGCAACAGGGTAG 1716 0.4312 MASLLNTVSPAANLSHKTKRPTCGGFLHSQVPNLHTFTLHKGFSRVSASTQIAISPKDTIFNLPNWRIGRNDQKGKELRIYDAFLHLEYLVGKGQKPEVNQATQLLYDLCKFNKARKAVRVMEMMVGSGIIPDAASYTHLVNFLCKRGNVGYAIQLVEKMEGHGFPTNTVTYNTLVKGLCMHGNLNQSLQLLDRLTKKGLVPNAFTYSFLLEAAYKERGVDEAMELLDDIIAKGGEPNLVSYNVLLTGLCKEGRTEEAIKLFRELPAKGFSPSVVSFNILLRSLCYEGRWEEANELLAEMDKEDQPPSVVTYNILITSLSLHGRTEQAFKVLDEMTRSGFKASATSYNPIIARLCNEGKVDLVLQCLDQMIHRRCHPNEGTYSAIAMLCEQGKVQEAFFIIQSLGSKQNFPMHDFYKNLIASLCRKGNTYPAFQMLYEMIKYGFTPDSYTYSSLIRGMCREGMLDEALNIFRILEENDHRPDIDNYNALILGFCKAQRTDLSIEIFLMMVNKGCVPNENTYTILVEGLAFEEETDIAADLMKELYLKKVLSQSTVERLCMQYDIKELVATG 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02425 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Gma15g02425 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Gma15g02425 571 SUPERFAMILY TPR-like 152 401 IPR011990 GO:0005515
Gma15g02425 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Gma15g02425 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Gma15g02425 571 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 567 - -
Gma15g02425 571 Gene3D Tetratricopeptide repeat domain 302 371 IPR011990 GO:0005515
Gma15g02425 571 Gene3D Tetratricopeptide repeat domain 231 301 IPR011990 GO:0005515
Gma15g02425 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Gma15g02425 571 Gene3D Tetratricopeptide repeat domain 74 230 IPR011990 GO:0005515
Gma15g02425 571 Gene3D Tetratricopeptide repeat domain 383 566 IPR011990 GO:0005515
Gma15g02425 571 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 567 - -
Gma15g02425 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Gma15g02425 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Gma15g02425 571 TIGRFAM PPR: pentatricopeptide repeat domain 486 518 IPR002885 -
Gma15g02425 571 TIGRFAM PPR: pentatricopeptide repeat domain 449 483 IPR002885 -
Gma15g02425 571 TIGRFAM PPR: pentatricopeptide repeat domain 275 308 IPR002885 -
Gma15g02425 571 TIGRFAM PPR: pentatricopeptide repeat domain 346 379 IPR002885 -
Gma15g02425 571 TIGRFAM PPR: pentatricopeptide repeat domain 240 274 IPR002885 -
Gma15g02425 571 TIGRFAM PPR: pentatricopeptide repeat domain 170 204 IPR002885 -
Gma15g02425 571 TIGRFAM PPR: pentatricopeptide repeat domain 136 166 IPR002885 -
Gma15g02425 571 TIGRFAM PPR: pentatricopeptide repeat domain 416 448 IPR002885 -
Gma15g02425 571 TIGRFAM PPR: pentatricopeptide repeat domain 310 343 IPR002885 -
Gma15g02425 571 Pfam PPR repeat 129 161 IPR002885 -
Gma15g02425 571 Pfam PPR repeat family 168 213 IPR002885 -
Gma15g02425 571 Pfam PPR repeat family 307 348 IPR002885 -
Gma15g02425 571 Pfam PPR repeat family 237 285 IPR002885 -
Gma15g02425 571 Pfam PPR repeat family 481 529 IPR002885 -
Gma15g02425 571 Pfam PPR repeat family 416 460 IPR002885 -
Gma15g02425 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Gma15g02425 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Gma15g02425 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02425 Gma-Chr15 51415894 51417730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g02425 77 569 Glycosyltransferase AT1G05670 24.356 1.28e-43 164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g02425 15 51415894 51417730 Gma15g02425 15 51415894 51417730 ECH