Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02417 ATGAGCAACATAAGCATGGTAGAGGCAAAGCTGCCACCAGGGTTCAGGTTTCATCCAAGAGATGAAGAACTTGTGTGTGATTACTTGATGAAGAAGGTGGCACACAATGATTCCCTTCTCATGATAAACGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGAAACAGCTTGTGTGGGAGGGAAGGAGTGGTATTTCTATACACAAAGAGACCGTAAGTATGCAACAGGGCTACGCACAAATCGTGCCACTGCTTCAGGGTATTGGAAGGCCACAGGGAAGGACAGGTCTATCCTCCGCAAGGGCACCCTTGTAGGGATGAGGAAGACTTTGGTGTTCTATCAAGGGAGGGCACCCAAAGGAAATAAAACTGAGTGGGTCATGCATGAGTTTCGAATTGAAGGACCTCATGGACCTCCAAAAATTTCTTCTTCCAAGGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTTCAGCCAAACCTAGAATGGGTAGCTGCTATGAGGACACAGGATCTTCATCTCTTCCTGCATTAATGGACTCTTACATAAGTTTTGACCAAACTCAAACCCATGCAGATGAGTTTGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCAGAACCAAACAAGCCCCATTTTCAACCACATGGCCACTATGGAGCCTAAGTTACCTGCCAACCATGCAACTAATGCATATGGAGGAGCACCAAATTTGGGTTATTGCTTAGACCCTTTATCATGTGACAGAAAAATGTTAAAAGCTGTTTTGAATCAGATCACAAAGATGGAAAGGAATCCACTTAACCAAAGCCTAAAAGGGTCACCAAGCTTAGGAGAAGGAAGTTCAGAGAGTTACTTATCTGAAGTGGGGATGCCCCACATGTGGAACAATTACTGA 912 0.4441 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVAHNDSLLMINVDLNKCEPWDIPETACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRSILRKGTLVGMRKTLVFYQGRAPKGNKTEWVMHEFRIEGPHGPPKISSSKEDWVLCRVFYKNREVSAKPRMGSCYEDTGSSSLPALMDSYISFDQTQTHADEFEQVPCFSIFSQNQTSPIFNHMATMEPKLPANHATNAYGGAPNLGYCLDPLSCDRKMLKAVLNQITKMERNPLNQSLKGSPSLGEGSSESYLSEVGMPHMWNNY 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02417 303 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 299 - -
Gma15g02417 303 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Gma15g02417 303 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN 3 299 - -
Gma15g02417 303 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Gma15g02417 303 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Gma15g02417 303 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02417 Gma-Chr15 51302546 51307312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g02417 2 301 NAC Transcription Factor Family AT1G56010 59.621 2.09e-125 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma15g02417 NAM 1.1e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g02417 15 51302546 51307312 Gma15g02417 15 51302546 51307312 ECH