Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02180 ATGGATGCAACACTACTCAATGTGAAATCAGTATATTCCTTTGCTGTCCTGCTATTGCTAAGCATCAAATCACTTGATACAAAGGCACAATCACCCAACTACATGGGAGATGACTGCCATAACACCACCCAAAAACCTCTCAGCGGTGAATACCAAACCAACCTTAACAGCATACTCTCATGGCTATCCACAGATGCAGCCACAAGCAAAGGTTATAACCACTACAGCTTTGGCAACAACACCTCTGGAAATCATGCTGTGTATGGCCTCTATGATTGCCGCGGCGACGTGGTTGGATACTTTTGCCAATTCTGTGTCTCTACTGCTGCCAGAGAAATTCTTCAGCGCTGCCCCAATAGAGTGTCTGCTTTCATATGGTATGATTTCTGCATGCTAAAGTACTCTAATGAAAACTTCTTTGGGAATGTTACAGTAGACCCATCATGGCATGTTGTTGGAACAAAAGATGTGTCTAGTGCAGAAGAGATTCAGAAAGGTGAAGATTTTATGAGAAGTTTGATCAGAAAAGCGACTCTGGTGACCAACCAGTTGTACTATATGGGTGGCTTCAATTTGAGTTCCTCTCAGAGAAGGTATGGCTTGGTGCAATGCAGTAGAGATCTCACAAATGAGGGGTGTAGACAATGTTTGGAGACCATGTTAGCACAAATTTCCAAATGTTGTGAAAAAAAGTTGGGGTGGTTTGCTGGGTCTGCAAGTTGTCTCATGAAGTATGATGACTACATGTTCTACCTTTTTCACAACCAATCATCTACAGTTCCTGAGGCATATAGAAAAATAGCTAAACAAGGGATTAAGATGTCAAAAATCTTGATCATTAGCTTCAGTGTGATTGGGTCAATAACTCTACTATGTTTCAGTGTTTATTGCTTCTGGTGCAGGAGTCGTCCTAGAAAAGATGGACTGATACCTCACACAGTTCGTCTATCCTCATATCAAAATGTTCAAACTGAGGAAACATTGAATCCAGACCTGCCTACAATCCCATTAATCGCAATTCAGCAGAGTACTGATAACTTTTCAGAAGCATCTAAACTAGGGGAAGGTGGATATGGCCCTGTTTACAAGGGAATTCTACCAGATGGAAGACAAATTGCGGTCAAAAGACTCTCACAAGCTTCTGGTCAAGGCTCAGAAGAGTTCAAGAACGAAGTAATGTTTATAGCTAAATTGCAACATCGCAACCTTGTAAGACTTTTGGCATGCTGCTTGGAGGAAAATGAAAAGATACTTGTATATGAGTATTTGTCGAATGCAAGTCTCAACTTTCACCTGTTTGATGATGAGAAGAAAAAGCAACTTGATTGGAAACTAAGATTAAGCATTATCAATGGAATAGCAAGAGGTATTTTATACCTTCACGAGGACTCTCGACTCAGAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGACCATGATATGAATCCCAAAATATCAGATTTTGGACTGGCAAGAGCATTTTCAAAGGGCCAGAAACAAGCAAATACAAACCGAGTAATGGGCACTTATGGATACATGGCTCCAGAGTATGCTATGGAAGGATTATTTTCGGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTGTTCTAGAAATTATTTGTGGGAAAAAGAACAGTGGATTCTATCTATCAGAATGTGGACAAGGTCTTCTTTTATATGCTTGGAAAATATGGTGTGCAGGAAAATGTTTGGAACTATTGGATCCAGTGCTGGAGGAATCTTGCATAGAGAGTGAAGTTGTGAAGTGCATACACATTGGTCTGTTGTGTGTTCAAGAAGATGCAGCAGATAGACCAACTATGTCCACTGTTGTTGTAATGCTAGCAAGTGATAAAATGCCCCTTCCAAAACCTAACCAGCCAGCATTTTCAGTCGGAAGAATGACCTTAGAGGATGCCTCTACATCAAAAAGTTCCAAGAATCTTTCCATTAATGATGTAACAGTCTCTAACATTTTACCAAGGTAA 1998 0.4019 MDATLLNVKSVYSFAVLLLLSIKSLDTKAQSPNYMGDDCHNTTQKPLSGEYQTNLNSILSWLSTDAATSKGYNHYSFGNNTSGNHAVYGLYDCRGDVVGYFCQFCVSTAAREILQRCPNRVSAFIWYDFCMLKYSNENFFGNVTVDPSWHVVGTKDVSSAEEIQKGEDFMRSLIRKATLVTNQLYYMGGFNLSSSQRRYGLVQCSRDLTNEGCRQCLETMLAQISKCCEKKLGWFAGSASCLMKYDDYMFYLFHNQSSTVPEAYRKIAKQGIKMSKILIISFSVIGSITLLCFSVYCFWCRSRPRKDGLIPHTVRLSSYQNVQTEETLNPDLPTIPLIAIQQSTDNFSEASKLGEGGYGPVYKGILPDGRQIAVKRLSQASGQGSEEFKNEVMFIAKLQHRNLVRLLACCLEENEKILVYEYLSNASLNFHLFDDEKKKQLDWKLRLSIINGIARGILYLHEDSRLRVIHRDLKASNVLLDHDMNPKISDFGLARAFSKGQKQANTNRVMGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIICGKKNSGFYLSECGQGLLLYAWKIWCAGKCLELLDPVLEESCIESEVVKCIHIGLLCVQEDAADRPTMSTVVVMLASDKMPLPKPNQPAFSVGRMTLEDASTSKSSKNLSINDVTVSNILPR 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02180 665 SUPERFAMILY Protein kinase-like (PK-like) 332 649 IPR011009 -
Gma15g02180 665 CDD STKc_IRAK 353 618 - -
Gma15g02180 665 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 663 - -
Gma15g02180 665 Gene3D - 33 139 IPR038408 -
Gma15g02180 665 Gene3D - 150 250 IPR038408 -
Gma15g02180 665 ProSiteProfiles Gnk2-homologous domain profile. 33 139 IPR002902 -
Gma15g02180 665 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 20 663 - -
Gma15g02180 665 ProSiteProfiles Protein kinase domain profile. 347 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma15g02180 665 ProSiteProfiles Gnk2-homologous domain profile. 145 250 IPR002902 -
Gma15g02180 665 Pfam Salt stress response/antifungal 190 248 IPR002902 -
Gma15g02180 665 Pfam Salt stress response/antifungal 39 136 IPR002902 -
Gma15g02180 665 SMART serkin_6 347 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma15g02180 665 Gene3D Transferase(Phosphotransferase) domain 1 423 626 - -
Gma15g02180 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Gma15g02180 665 Pfam Domain of unknown function (DUF3403) 620 665 IPR021820 GO:0004674
Gma15g02180 665 Pfam Protein tyrosine and serine/threonine kinase 351 617 IPR001245 GO:0004672|GO:0006468
Gma15g02180 665 Gene3D Phosphorylase Kinase; domain 1 311 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02180 Gma-Chr15 44646934 44676154 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g02180 10 665 Receptor kinase-like Gene Family AT4G05200 42.415 1.07e-179 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma15g02180 PK_Tyr_Ser-Thr 7.3e-47 CL0016