LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma15g02175	ATGTCCTCTGATGCAGCTACAAGCAAAGGTTATAACTACACCAGCATAGGCAACAACAGTCCTGCGTATGGCCTCTATGATTGCCACAGTGACGTGGTTGGATACTTTTGTCAATTATGTGTTTCTACTGCTGCCAGAGAAGTTCGTCTGCGCTGCCCCAATAGGATTTCTGCTGTAGTTTGGTATGATTCCTGCATTCTAAGGTACTCAAATGAGAGCTTCTTTGGGAAAGCTCAGACATACCCAACATGGCATCACATATTTGGAACAAAAAACATATCCAACATGGAAGAGATTCAGAAAGGTGAGGATTTTGTGAGAAGTTTGATCAGAAAAGCAACTGTGGAGACCAACCAGCTGTACTATATGGAAGGCTTCAATGTGAGCTCCTCTCAGAGAAGGTATGGCTTGGTGCAGTGCAGCAGAGATCTCACCAATGAAGGGTGCAGACAGTGTTTAGAGGCCATGCTAGCTCAGGTTCCCAAATGTTGTGAACATAAGTTGGGGTGGCTCGTTGGTACTGCAAGTTGTCACATAAAGTATGATGATTATATGTTCTATCTTTTTAACAACCAATCATATCTTGTCCATAAGATAACAGCTAAACAAGGGCATTTGAGCAAGTCAAGAAACTTGATCTTTGGATTAAGTGCGTTGGGGATGGTAGCCCTACTGTGTTTGAGTGTCTATTGCTTGTGTTGCCGGAATAGAGTTAGAGAAGACGGGCTGCTACCTGATACTGTTCCTCTATCTGCATATACAAACTTGCCTACAATCCAATTAATCACAATTCTGGAGACTACTAATAACTTTTCTGAAGCATCAAAATTAGGCGAAGGTGGATTTGGCCCAGTTTACAAGGGAATTCTACCAGATGGAAGACAAGTTGCGGTCAAAAGGCTCTCAAGAGCTTCTAATCAAGGCTCAGAGGAGTTTAAGAATGAAGTAACATTTATAGCCAAATTGCAACATTGCAACCTTGTAAGACTTTTGGCATGCTGCTTGGACGAAAATGAAAAGATTCTTGTATATGAGTATTTGTCGAATGCAAGTCTCGACTTTCACCTATTTGATGATGAGAAAAGGAAGCAACTCGATTGGAAACTTAGGTTAAGCATGATCAACGGAATAGCAAGAGGTCTTTTATATCTTCACGAGGGCTCTCGACTCAAGGTAATCCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGACGATGAGATGAATCCCAAAATATCAGATTTTGGATTGGCTAGAGCATTTGAAAATGGCCAGAACCAGGCAAACACAAATCGAATAATGGGCACTTATGGCTACATGGCTCCTGAGTACGCTATGGAAGGTTTATTTTCAATAAAATCTGATGTTTTCAGCTTTGGAGTTCTTGTCCTAGAGATCATTTGTGGAAAGAGGAACAGTGGATTTTTTCTATCAGAACATGGTCAAACTCTTCTTTTATATACTTGGAGAATGTGGTGCTCAGGAAAATGTTTGGAATTAATGGATCCAGTGCTAGAAAATTCCTACATAGCCAATGAAGTTGTGAAGTGCATACAGATTGGTTTATTGTGTGTTCAAGAAGCTGCAGCAAATAGACCAACCATGTCCAATGTTGTTGTATTTTTGGCAAGCGATGGAATGGCCCTTCCAAACCCTAACAAACCTGCATTCTCGGTTGGAAGAAGGACTTCAGACGAAACATCTAGTTCAAGAAATTCCAAAAATATTTCCATTAATGATGCATCAATCTCTAGTATTGTACCAAGGTAA	1770	0.4051	MSSDAATSKGYNYTSIGNNSPAYGLYDCHSDVVGYFCQLCVSTAAREVRLRCPNRISAVVWYDSCILRYSNESFFGKAQTYPTWHHIFGTKNISNMEEIQKGEDFVRSLIRKATVETNQLYYMEGFNVSSSQRRYGLVQCSRDLTNEGCRQCLEAMLAQVPKCCEHKLGWLVGTASCHIKYDDYMFYLFNNQSYLVHKITAKQGHLSKSRNLIFGLSALGMVALLCLSVYCLCCRNRVREDGLLPDTVPLSAYTNLPTIQLITILETTNNFSEASKLGEGGFGPVYKGILPDGRQVAVKRLSRASNQGSEEFKNEVTFIAKLQHCNLVRLLACCLDENEKILVYEYLSNASLDFHLFDDEKRKQLDWKLRLSMINGIARGLLYLHEGSRLKVIHRDLKASNVLLDDEMNPKISDFGLARAFENGQNQANTNRIMGTYGYMAPEYAMEGLFSIKSDVFSFGVLVLEIICGKRNSGFFLSEHGQTLLLYTWRMWCSGKCLELMDPVLENSYIANEVVKCIQIGLLCVQEAAANRPTMSNVVVFLASDGMALPNPNKPAFSVGRRTSDETSSSRNSKNISINDASISSIVPR	589

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma15g02175	589	ProSiteProfiles	Gnk2-homologous domain profile.	81	186	IPR002902	-
	Gma15g02175	589	CDD	STKc_IRAK	277	539	-	-
	Gma15g02175	589	SUPERFAMILY	Protein kinase-like (PK-like)	255	572	IPR011009	-
	Gma15g02175	589	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE KINASE	1	586	-	-
	Gma15g02175	589	Pfam	Domain of unknown function (DUF3403)	544	589	IPR021820	GO:0004674
	Gma15g02175	589	Gene3D	-	1	74	IPR038408	-
	Gma15g02175	589	Gene3D	-	83	186	IPR038408	-
	Gma15g02175	589	Pfam	Protein tyrosine and serine/threonine kinase	274	541	IPR001245	GO:0004672\|GO:0006468
	Gma15g02175	589	MobiDBLite	consensus disorder prediction	553	575	-	-
	Gma15g02175	589	SMART	serkin_6	271	542	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma15g02175	589	Gene3D	Phosphorylase Kinase; domain 1	246	346	-	-
	Gma15g02175	589	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	1	586	-	-
	Gma15g02175	589	Gene3D	Transferase(Phosphotransferase) domain 1	347	548	-	-
	Gma15g02175	589	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	392	404	IPR008271	GO:0004672\|GO:0006468
	Gma15g02175	589	Pfam	Salt stress response/antifungal	9	71	IPR002902	-
	Gma15g02175	589	Pfam	Salt stress response/antifungal	105	184	IPR002902	-
	Gma15g02175	589	ProSiteProfiles	Gnk2-homologous domain profile.	1	74	IPR002902	-
	Gma15g02175	589	ProSiteProfiles	Protein kinase domain profile.	271	542	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma15g02175	589	MobiDBLite	consensus disorder prediction	557	575	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma15g02175	Gma-Chr15	44494259	44516461	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma15g02175	2	589	Receptor kinase-like Gene Family	AT4G05200	42.029	7.62e-161	474

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gma15g02175		PK_Tyr_Ser-Thr	9.3e-48	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma04g01173	04	16875081	16879264	Gma15g02175	15	44494259	44516461	PCT
	Gma15g02175	15	44494259	44516461	Gma04g01173	04	16875081	16879264	PCT