Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02017 ATGTTCCAACCTAACAACCCCAAAATGGATTCCTCCACCACATTCCTCAACGACCTTCCTCCCCTCAAGAGACTAAGACTCTTGCAACAACAACAGCAACAAAAAGAAGAACATCAGTATTATGACTCTTCTTCACCTTTACCCGCTAAAAAACGCAAGGAGTCTCGAACCCTATCTCCACCCTCTCCCACCACCACCAAAACCGTTTATAACTATTCCCTCCCCGCCAAGAAAAGAGTGTGGGCCCTACAACCCCAGAGCCCACCCTCAAATGACGTCGTCCCCGCCTTCGACCTCAATGTGGAATACACACCCAGCCCCAACAACCACGGAGACTTCGAAGAAGACCACTCCGAGGACGAGGACGGGGTTCTATGCTGTGTGTGCCAGAGCACGGACGGCGACCCTGCGGATCCAATAGTCTTCTGCGACGGGTGCGACCTCATGGTGCACGCCTCCTGCTACGGCACTCCCCTGTCCAAGTCCATCCCGGATGGAGACTGGTTCTGCGAACGCTGCTGTTTCCGTTTCGAGAAGAATGATGTTGGCAACATCAATTGCAATGCTTGCGTGCTGTGCCCTTCCACCGAGGGGGCGATGAAGCGGACCACCGTCGAGGAGGAAGGTGGCGCGACGTGGGCACACGTGGTGTGCGCCCTGTTCGTGCCGGAAGTGTTCTTTCTTGACCCCGAAGGGAGGGAGGGGATCGACTTCTCCAAGGTTCCAAAGAAGAGGTGGGAGGAGAGGTGCTATCTTTGCGGATCCTGCGAAGGGTGTGCTTTGGTGTGTTCTGAGCCCAAGTGCGGGTTGGGGTTTCATGTCACTTGTGCGCTGAAGGAGGAACTTTGGATTGAGTACAGGGAAGGGAAGAAGGGTGGTACCATAGTTGCCGGCTTCTGCAAAAACCACACCCAAGTTTGGGAAAAGCAACAGCAATCCGGGAAGTACAAAATTGTTGCTGTTGAAGATAAAAAGTAG 978 0.5378 MFQPNNPKMDSSTTFLNDLPPLKRLRLLQQQQQQKEEHQYYDSSSPLPAKKRKESRTLSPPSPTTTKTVYNYSLPAKKRVWALQPQSPPSNDVVPAFDLNVEYTPSPNNHGDFEEDHSEDEDGVLCCVCQSTDGDPADPIVFCDGCDLMVHASCYGTPLSKSIPDGDWFCERCCFRFEKNDVGNINCNACVLCPSTEGAMKRTTVEEEGGATWAHVVCALFVPEVFFLDPEGREGIDFSKVPKKRWEERCYLCGSCEGCALVCSEPKCGLGFHVTCALKEELWIEYREGKKGGTIVAGFCKNHTQVWEKQQQSGKYKIVAVEDKK 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02017 325 ProSiteProfiles Zinc finger PHD-type profile. 123 176 IPR019787 -
Gma15g02017 325 SUPERFAMILY FYVE/PHD zinc finger 112 179 IPR011011 -
Gma15g02017 325 MobiDBLite consensus disorder prediction 26 41 - -
Gma15g02017 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 306 IPR013083 -
Gma15g02017 325 MobiDBLite consensus disorder prediction 1 69 - -
Gma15g02017 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 185 IPR013083 -
Gma15g02017 325 CDD PHD_BRPF_JADE_like 125 173 - -
Gma15g02017 325 ProSiteProfiles Extended PHD (ePHD) domain profile. 187 304 IPR034732 -
Gma15g02017 325 MobiDBLite consensus disorder prediction 1 18 - -
Gma15g02017 325 PANTHER PHD FINGER PROTEINS 14 111 - -
Gma15g02017 325 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 14 111 - -
Gma15g02017 325 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 118 322 - -
Gma15g02017 325 PANTHER PHD FINGER PROTEINS 118 322 - -
Gma15g02017 325 Pfam PHD-finger 126 174 IPR019787 -
Gma15g02017 325 Pfam PHD-zinc-finger like domain 189 302 - -
Gma15g02017 325 SMART PHD_3 125 174 IPR001965 -
Gma15g02017 325 SMART PHD_3 249 304 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02017 Gma-Chr15 34194583 34196501 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g02017 24 325 C2H2 Transcription Factor Family AT3G14740 49.267 4.81e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma15g02017 zf-HC5HC2H_2 1.2e-25 CL0390