Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00427 ATGGATCCTTCTAATGGACAACCCCAGCAAATGTCTAGCCAGTCAGTGGAGAAGAAGCCAAAGCCTCATCCAGAACAAGCTCTGAAGTGTCCAAGATGTGACTCCACCAGCACAAAATTTTGCTACTACAACAATTATAGTCTTTCTCAGCCAAGATATTTCTGCAAGTCTTGTAAGAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGAGGATGCAGAAAGAAAAGATCATCATCAAAGAGGGCTCAGGATCAAACATTCACACCCAATCTTAACCCACTCACTGCACTCCCTCATTTGTCTTATGACTCCAATGACTTAACTCTAGCATTAGCTAGGTTTCAAAAACAATCAAGTGGGCAATTGGGTTACAATGACCATGATCTTTCAATTATGGGGAACCCCACCACAGGCTCCTTTTGTGACATTCTTGGCAATTCAGGCATGAATCCCTCCTCAGAAAACCCTTCATTTTTGGACGAATTTCAAACTGGGTTCCTTCAGACACAAAACCATCTTCAGAATTTGTATTGTGTGTATGGAAATGGGGACTTGGGGGAGGTGGATAATGGCAATTCTGGTGGGGTTGGGGTTAGTGGAGAGATGATGCTCCCTTATGATCAAGTGGTGATGAGCAATGCAACAGCTCAATCGGTGAGTGTAATGAAGCAAGAAATGTGTAGTGGCAGAGAACAAAGTGAAAGGAGGGTGTTGGGGGGTTTCCCATGGCAGATTAATGCAGACACTAACATTATTGGTGAACTTGATTCAGGAAAAGCAATTGCAAGTTGGAACAGTTTCACAAATTCTTGGCATGGGCTTCTTCAAAGTCCTCTAATGTAG 858 0.4336 MDPSNGQPQQMSSQSVEKKPKPHPEQALKCPRCDSTSTKFCYYNNYSLSQPRYFCKSCKRYWTKGGTLRNVPVGGGCRKKRSSSKRAQDQTFTPNLNPLTALPHLSYDSNDLTLALARFQKQSSGQLGYNDHDLSIMGNPTTGSFCDILGNSGMNPSSENPSFLDEFQTGFLQTQNHLQNLYCVYGNGDLGEVDNGNSGGVGVSGEMMLPYDQVVMSNATAQSVSVMKQEMCSGREQSERRVLGGFPWQINADTNIIGELDSGKAIASWNSFTNSWHGLLQSPLM 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00427 285 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 284 IPR045174 GO:0003700|GO:0006355
Gma15g00427 285 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677|GO:0006355
Gma15g00427 285 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Gma15g00427 285 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
Gma15g00427 285 MobiDBLite consensus disorder prediction 1 17 - -
Gma15g00427 285 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 13 284 - -
Gma15g00427 285 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00427 Gma-Chr15 3650204 3652254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00427 26 285 C2C2-Dof Transcription Factor Family AT2G28510 37.367 3.01e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma15g00427 zf-Dof 6.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00427 - - gmx:100795408 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00427 15 3650204 3652254 Gma15g00427 15 3650204 3652254 ECH
Gma13g02933 13 43887757 43889350 Gma15g00427 15 3650204 3652254 GST
Gma15g00427 15 3650204 3652254 Gma12g00645 12 5407489 5409564 PCT
Gma15g00427 15 3650204 3652254 Gma11g01339 11 11616899 11619746 PCT
Gma12g00645 12 5407489 5409564 Gma15g00427 15 3650204 3652254 PCT
Gma11g01339 11 11616899 11619746 Gma15g00427 15 3650204 3652254 PCT