Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g00735 ATGTCTAACAATACCAACTCCTCCTCCTCAAAAACTCAACCCACTTTCTTGAATCCTCCTAATCCTAACCCCCAACATTTCTCGAAAAGCAATGGTGTGGGCAATCACCAAGGCCAAAACTTGATGCCCCCTTTTATGCAGCCACCCATGAATGCAGCACCTTTCATGAATGCTGCAAATCACAATCATTTTCCCTTGCATATGCCTCATATGGGTTTGCCTGGTCATCAACAGGGTCAACCACATGTGGGGGGTTTAGGTCCCCAAAACAGTGTTGGCAATGCCAATTACAACAATCCAATGTTTCCTCCTGTTCAGGGACAAGTCATGCAGAATCAAGCTCAATTCAATTTGTCTCCACTCCAGGGACAATTTTTAGCACAAAGTATTCTCAACATGCTTCAGCAGCCCAACATGAATATGAGTATGCCAAATGGCCAGTTTTGTGGCCCTTACCTTATGCAGAATATGAATCCGCAGTTACCTATGCAAATGCCAAACCCTTCTCAGGGGGTTCCGTATGGTATGCATCCTGGTTCCTGCCCCATGTTCGGGTTTCCAAACCAAGTGCCTCAGGCTATGGTCCCTCAGAATTCAATGTTTTCCACAAATCCCCAGTTAGGTTTTGTGCCCGGAAATCAGGTCCGGCCACAGATTGACCCAAACGAGAAAAACCTTAATCCACCAAACGTTAGTGCAAATTCTTTTGTATCATCATCCCCTTTTTCGTCTCAGCAGTTACAAGGGAATACTTCTGGATCACTTAATCCTAATTTGGCTCACACAAATAACTCTCAACCTCCTGCATTTATGAAACAGGAAAAACCTAATAGCAATATTAAAACTAATGTTCCAAACTCTAATTGGAAAGGATCACCTAGCAAAAACTTCAAAAATAAACCAAATCGAGGGGGGTTTCAAGCAGGATTCCAGAAGTCGAAATTTCATGATGTCAACAATGGAAAGAAGGGAAGTGGGTTTCCTATAGAACATAATGGCAAAGGGCCTAACAGTGGGAGGGGAGGACACTATGGTTTAAAACCAAAGGAACATAAGCAGCAACCAGAAAGATCCTTGTCTGTGACTTACACTGTGCAAGAGATCCAACAGTGGCGTGAAGCACGGAAAAAGAATCATCCTTTCAATAACAACATTCAGAAGAAGCACAGTGAACACCCAAAAGACAGGAAGGCCATTAATAGGGAGGTCTTACAAAGAGAGCTCAAGGAGGTGTTAGCGAAGCAAGCTGAATTGGGAGTTGAAGTTGCTGAAATACCATCATACTACTTGAAGAATTCTGACAATCAAGCTCTTCAGAGTGAAGGGAAAAACAAATTTACTGACAAAAGAAAATTCCAAAACAAGTTCAACAAGAAATCAGACAGAAAAGGTAGGTTCGCCAAGAGGCAGAAGTTTGATGACAAAGATTTTTCAGAAAGCCCCTCTTTGAAGAAGAGGAAGCCTACATTATTGCAGAAACTCCTGAGTTCAGATGTAAAGAGGGATAAGAGCCACCTGATTCAGGTTTTCAGCTTCTCCGCCGCCGTACAGCCACCACCTCCGTTCGGATCTCCGGCGGACCTACTATCCCTACTACTCTATTTACACGGAAGAACAAAAAAACTATCCCACAAAAAAAATTCCAAAAGCGGTTCGATTCAGGTGCAGCATCAGAGTCCGGTGTCGGCTCCTCCTCCGAACGGCGTGGCTAACGCGCCGAACAACCCGAACCAGTTCGTTACGACGTCGTTGTACGTCGGCGATCTTGAGCAGAATGTCAACGACGCACAGCTATACGATCTGTTCAACCAGGTCGTCCAAGTCGTTTCGGTGCGCGTTTGCAGGGACCTTACGACGCGTCGTTCACTCGGTTATGGCTATGTTAATTTCAGTAACCCTCAGGATGCGGCGAGGGCATTGGATGTGCTGAATTTCACTCCACTCAACAACAGACCTATTAGGATCATGTATTCTCATCGGGATCCTAGTCTTAGGAAGAGTGGTACTGCGAATATTTTTATCAAGAATTTGGATAAGGCTATTGACCACAAGGCCTTACATGATACTTTTTCTTCTTTTGGACTCATTCTTTCTTGCAAAATAGCAACTGATGCTTCTGGCCTGTCTAAGGGCTATGGTTTTGTTCAATTCGACAGTGAAGAGTCTGCACAGAATGCTATTGACAAGTTAAATGGCATGTTGATCAATGATAAGCAGGTCTATGTAGGCCATTTTCTGCGAAAGCAAGATAGAGAGAATGCTCTCAGTAAGACAAAATTTAATAATGTCTATGTGAAAAACTTATCAGAGTCAACCACGGATGAAGAGTTGATGAAATTTTTTGGAGAATATGGTACCATTACTAGTGCTGTAATAATGAGGGACGCAGACGGTAAATCAAGGTGTTTTGGCTTTGTCAATTTTGAAAACCCAGATGATGCTGCCAAAGCTGTTGAAGGACTTAATGGGAAGAAAGTTGATGATAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAATCTGAGCGTGAACAAGAACTGAAAGGACGGTTTGAGCAGAGTATAAAGGAATCTGCTGACAAATATCAAGGTGTGAACCTGTATCTCAAGAACTTGGATGATACTATCAGTGATGAAAAACTTAAGGAAATGTTTGCTGAATATGGTACAATAACTTCATGCAAGGTTATGCGAGACCCCACTGGAATCGGTAGAGGATCAGGATTTGTTGCATTTTCAACTCCTGAGGAAGCATCTCGTGCTCTCGGTGAGATGAATGGTAAAATGATTGCTGGAAAACCTCTGTACGTTGCCCTTGCACAGAGAAAAGAAGACAGAAGAGCAAGGTTACAGGCTCAGTTTTCACAGATGAGGCCTGTTGCAATAACGCCTTCTGTTGCGCCCCGTATGCCTCTCTACCCTCCTGGTGCTCCTGGTCTTGGACAACAATTTTTGTATGGGCAAGGACCCCCAGCCATGATGCCTCCACAAGCTGGATTTGGATACCAGCAGCAACTAGTTCCTGGAATGAGACCTGGTGGTGGTCCCATGCCAAGCTTCTTTGTTCCTATGGTTCAGCAAGGCCAACAAGGGCAGCGCCCAGGGGGCCGCCGAGGAACAGGTCCTGTGCAACAACCCCAACAGCCAATGCCAATGATGCAGCAGCAGATGCTTCCAAGGGGGCGTGTCTATCGTTACCCTCCTGGCCGCAACATGCAAGATGTCCCACTTCAAGGTGTAGCTGGTGGAATGATGTCAGTCCCTTATGACATGGGTGGTCTGCCAATCCGCGATGCTGTGGGACAGCCAATGCCCATTCAAGCTTTGGCCACGGCTCTTGCAAATGCTCCCCCTGAACAGCAGAGGACTATGCTCGGTGAAGCTTTATACCCGCTTGTGGATCAGCTGGAACACGATGCTGCAGCAAAGGTTACTGGCATGCTTCTGGAGATGGACCAGCCTGAAGTTTTACATCTGATTGAGTCACCAGATGCTCTGAAGGCAAAAGTTGCTGAAGCCATGGATGTGTTAAGAAATGTTGCTCAACAGCAAACTAACCCAGCTGATCAACTAGCTTCACTCTCTCTCAATGACAATCTTGTGTCTTAG 3606 0.4506 MSNNTNSSSSKTQPTFLNPPNPNPQHFSKSNGVGNHQGQNLMPPFMQPPMNAAPFMNAANHNHFPLHMPHMGLPGHQQGQPHVGGLGPQNSVGNANYNNPMFPPVQGQVMQNQAQFNLSPLQGQFLAQSILNMLQQPNMNMSMPNGQFCGPYLMQNMNPQLPMQMPNPSQGVPYGMHPGSCPMFGFPNQVPQAMVPQNSMFSTNPQLGFVPGNQVRPQIDPNEKNLNPPNVSANSFVSSSPFSSQQLQGNTSGSLNPNLAHTNNSQPPAFMKQEKPNSNIKTNVPNSNWKGSPSKNFKNKPNRGGFQAGFQKSKFHDVNNGKKGSGFPIEHNGKGPNSGRGGHYGLKPKEHKQQPERSLSVTYTVQEIQQWREARKKNHPFNNNIQKKHSEHPKDRKAINREVLQRELKEVLAKQAELGVEVAEIPSYYLKNSDNQALQSEGKNKFTDKRKFQNKFNKKSDRKGRFAKRQKFDDKDFSESPSLKKRKPTLLQKLLSSDVKRDKSHLIQVFSFSAAVQPPPPFGSPADLLSLLLYLHGRTKKLSHKKNSKSGSIQVQHQSPVSAPPPNGVANAPNNPNQFVTTSLYVGDLEQNVNDAQLYDLFNQVVQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDSEESAQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMKFFGEYGTITSAVIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKVDDKEWYVGKAQKKSEREQELKGRFEQSIKESADKYQGVNLYLKNLDDTISDEKLKEMFAEYGTITSCKVMRDPTGIGRGSGFVAFSTPEEASRALGEMNGKMIAGKPLYVALAQRKEDRRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVQQGQQGQRPGGRRGTGPVQQPQQPMPMMQQQMLPRGRVYRYPPGRNMQDVPLQGVAGGMMSVPYDMGGLPIRDAVGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQTNPADQLASLSLNDNLVS 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g00735 1201 MobiDBLite consensus disorder prediction 218 301 - -
Gma14g00735 1201 MobiDBLite consensus disorder prediction 543 572 - -
Gma14g00735 1201 CDD RRM4_I_PABPs 863 941 - -
Gma14g00735 1201 PANTHER RNA BINDING PROTEIN 571 1186 - -
Gma14g00735 1201 MobiDBLite consensus disorder prediction 1 43 - -
Gma14g00735 1201 SUPERFAMILY RNA-binding domain, RBD 761 944 IPR035979 GO:0003676
Gma14g00735 1201 MobiDBLite consensus disorder prediction 209 357 - -
Gma14g00735 1201 CDD RRM3_I_PABPs 760 839 - -
Gma14g00735 1201 SMART rrm2_1 671 743 IPR003954 GO:0003676
Gma14g00735 1201 SMART rrm2_1 865 937 IPR003954 GO:0003676
Gma14g00735 1201 SMART rrm2_1 583 656 IPR003954 GO:0003676
Gma14g00735 1201 SMART rrm2_1 762 834 IPR003954 GO:0003676
Gma14g00735 1201 Gene3D - 1100 1183 - -
Gma14g00735 1201 PANTHER POLYADENYLATE-BINDING PROTEIN 571 1186 - -
Gma14g00735 1201 CDD RRM1_I_PABPs 583 662 - -
Gma14g00735 1201 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 582 660 IPR000504 GO:0003723
Gma14g00735 1201 SMART rrm1_1 583 656 IPR000504 GO:0003723
Gma14g00735 1201 SMART rrm1_1 865 937 IPR000504 GO:0003723
Gma14g00735 1201 SMART rrm1_1 762 834 IPR000504 GO:0003723
Gma14g00735 1201 SMART rrm1_1 671 743 IPR000504 GO:0003723
Gma14g00735 1201 Gene3D - 747 848 IPR012677 -
Gma14g00735 1201 Gene3D - 849 953 IPR012677 -
Gma14g00735 1201 Gene3D - 538 669 IPR012677 -
Gma14g00735 1201 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 761 838 IPR000504 GO:0003723
Gma14g00735 1201 MobiDBLite consensus disorder prediction 457 484 - -
Gma14g00735 1201 CDD RRM2_I_PABPs 668 744 IPR045305 -
Gma14g00735 1201 Pfam Poly-adenylate binding protein, unique domain 1112 1176 IPR002004 GO:0003723
Gma14g00735 1201 MobiDBLite consensus disorder prediction 548 565 - -
Gma14g00735 1201 Gene3D - 670 744 IPR012677 -
Gma14g00735 1201 SUPERFAMILY PABC (PABP) domain 1046 1192 IPR036053 GO:0003723
Gma14g00735 1201 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 670 747 IPR000504 GO:0003723
Gma14g00735 1201 Pfam Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1) 358 393 IPR019496 -
Gma14g00735 1201 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 864 941 IPR000504 GO:0003723
Gma14g00735 1201 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1104 1181 IPR002004 GO:0003723
Gma14g00735 1201 SMART poly_2 1116 1179 IPR002004 GO:0003723
Gma14g00735 1201 MobiDBLite consensus disorder prediction 1026 1051 - -
Gma14g00735 1201 MobiDBLite consensus disorder prediction 466 483 - -
Gma14g00735 1201 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 763 831 IPR000504 GO:0003723
Gma14g00735 1201 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 866 934 IPR000504 GO:0003723
Gma14g00735 1201 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 672 740 IPR000504 GO:0003723
Gma14g00735 1201 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 584 654 IPR000504 GO:0003723
Gma14g00735 1201 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 583 1177 IPR006515 GO:0003723
Gma14g00735 1201 SUPERFAMILY RNA-binding domain, RBD 582 751 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g00735 Gma-Chr14 7413848 7427104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g00735 581 1200 Eukaryotic Initiation Factors Gene Family AT1G49760 71.157 0.0 855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00735 14 7413848 7427104 Gma14g00735 14 7413848 7427104 ECH
Gma17g02304 17 41018389 41023605 Gma14g00735 14 7413848 7427104 GST