Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03153 ATGCAGGATCCAACGTTGTTCCAACCCATGAAACCCCACTTTCCCGAACAGGAACAACTTAAATGCCCGCGCTGTGACTCCACCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCGCAGCCACGCCATTTTTGCAAGAACTGCAGAAGGTATTGGACCAAAGGTGGCGCCTTGAGAAACATCCCCGTTGGTGGTGGAAGCAGAAAGAACACAAAGCGATCATCTTCATCCAACAACAACACCAAACACGCTTCTCCATCACCCCCAGTTTCTTCTGCACCCGCTCCAGAAATCGACCCGACCCGAACTGACCCCAACCCGGTTGGTGGTGGTGGGTCTTTCCGTTCCCTTTTGGCATCGAGTGGCCATTTGGGCCTAGGGAACCTCTTGGAGGGTCTGAATTCAAGTGGGTCTAATCTCAAAAGTGTGCAAATGGAAGAGTTTGGGGAGAATGTTAGTTCGGGTACTCCAGTGGCGGTTCCGGGTTCGGGTCAGAATCCCGGGTTGGAGATGCAAAGCAATGGGAATGCTGAGAGTTTTCTGAGTTTGCAAAATGGTGATTCAGGCTGTTGTAATGGTACTAATGGCTGGTCTAACCTTGCTATTTTCACTCCTGGGTCAAGCTATCAGATTACAAACCAGAAGGCCACTGCAATAGGATCACTAGCTGAGGAGATTTGTGATTGTTAG 696 0.4971 MQDPTLFQPMKPHFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRSSSSNNNTKHASPSPPVSSAPAPEIDPTRTDPNPVGGGGSFRSLLASSGHLGLGNLLEGLNSSGSNLKSVQMEEFGENVSSGTPVAVPGSGQNPGLEMQSNGNAESFLSLQNGDSGCCNGTNGWSNLAIFTPGSSYQITNQKATAIGSLAEEICDC 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03153 231 MobiDBLite consensus disorder prediction 61 116 - -
Gma13g03153 231 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Gma13g03153 231 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Gma13g03153 231 MobiDBLite consensus disorder prediction 69 90 - -
Gma13g03153 231 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 212 IPR045174 GO:0003700|GO:0006355
Gma13g03153 231 MobiDBLite consensus disorder prediction 149 176 - -
Gma13g03153 231 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 2 212 - -
Gma13g03153 231 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03153 Gma-Chr13 45667487 45669492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03153 11 127 C2C2-Dof Transcription Factor Family AT1G51700 59.559 5.00e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma13g03153 zf-Dof 2.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03153 - - gmx:778096 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03153 13 45667487 45669492 Gma13g03153 13 45667487 45669492 ECH
Gma13g03153 13 45667487 45669492 Gma07g00112 07 960692 962401 PCT
Gma13g03153 13 45667487 45669492 Gma08g01802 08 16070491 16072341 PCT
Gma07g00112 07 960692 962401 Gma13g03153 13 45667487 45669492 PCT
Gma08g01802 08 16070491 16072341 Gma13g03153 13 45667487 45669492 PCT