Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02990 ATGGTTTTCTCTTCTATTCCGGTCTATTTAGATCCTCCCAATTGGCAGCAGCAACAACAAAATCAACACCAAGCAAATGGAAGTAACAGTCCTCATGAGCTGCTTCCGCCGCTGCCTCAGCCGCCACAGGCCCCTCACGTGGGGGTTGAATCCGAGCAAATCCGGTCCGGTCTGATGGCGGATCGGGCCAAGATTCCGGCACCGGAAGGAGTTCTGAAGTGTCCTCGGTGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAATTACAGCCTCTCTCAGCCAAGGCACTTCTGCAAGACATGTAGGCGTTATTGGACAAGAGGTGGTGCTCTCAGGAACGTTCCTGTTGGTGGAGGATGCCGTAGGAACAAAAAGAACAAAAGGTCTCGCTCCAAATCTCCGGTTTCTACTGAGAAACCATCACTTCCCAATAATACAAGTGCAATCCCTGAGCTTATTGGTCGTTTCCCACAACCTTTCATGGCCTCTCTTCAGAGTATGAACCGCTATGGTGTAGGGATTAACACAGGTGTTAACTTGCGTGAGATTCAAGCACAGAACGCTTCTCAAATGGAGTTTCAAATTGGAGGTCTTGGCAATGGTTCAAGCGTTGCTACTGCAGGAGGAGGAGGAGGAGGAGGAGTGGAGCAGTGGCGGTTTCAGCAGTTTCCTTTCTTGAATGGTTTTGAGTCAACTTCAGCTGCTTCTAATTCCTACCCTTTTCAAAGTGAAATTGTTGAAGGTTTGGTTGGAGATATTAATGCCACAAGTTCTAGGATTACTCAGCTGCCAGCACGGGTTAAAATGGAATATAACGGTGGCTTGAATTTGTCAAGATCTCCTTTGAATGTCTCAGAAAATAGTAACCATTTCTATTCATGGACGGATTTATCTGGTCTTGCATCTTCTTCAGCGAGTCATCTCTTGTAA 933 0.4673 MVFSSIPVYLDPPNWQQQQQNQHQANGSNSPHELLPPLPQPPQAPHVGVESEQIRSGLMADRAKIPAPEGVLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPVSTEKPSLPNNTSAIPELIGRFPQPFMASLQSMNRYGVGINTGVNLREIQAQNASQMEFQIGGLGNGSSVATAGGGGGGGVEQWRFQQFPFLNGFESTSAASNSYPFQSEIVEGLVGDINATSSRITQLPARVKMEYNGGLNLSRSPLNVSENSNHFYSWTDLSGLASSSASHLL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02990 310 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
Gma13g02990 310 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 306 IPR045174 GO:0003700|GO:0006355
Gma13g02990 310 MobiDBLite consensus disorder prediction 116 149 - -
Gma13g02990 310 MobiDBLite consensus disorder prediction 16 54 - -
Gma13g02990 310 MobiDBLite consensus disorder prediction 16 33 - -
Gma13g02990 310 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
Gma13g02990 310 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 306 - -
Gma13g02990 310 Pfam Dof domain, zinc finger 71 126 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02990 Gma-Chr13 44408979 44410619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02990 19 309 C2C2-Dof Transcription Factor Family AT3G55370 39.118 4.15e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma13g02990 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02990 - - gmx:100787775 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02990 13 44408979 44410619 Gma13g02990 13 44408979 44410619 ECH
Gma13g02990 13 44408979 44410619 Gma15g00376 15 3173919 3175010 GST
Gma13g02990 13 44408979 44410619 Gma12g00567 12 4755004 4756686 PCT
Gma13g02990 13 44408979 44410619 Gma11g01270 11 10834065 10835697 PCT
Gma12g00567 12 4755004 4756686 Gma13g02990 13 44408979 44410619 PCT
Gma11g01270 11 10834065 10835697 Gma13g02990 13 44408979 44410619 PCT