LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma13g01770	ATGCCGGGGAAAGCTGACACTGATGATTGGCGAGTAGAGCGGGGTGAGCAGATTCAGTTTCAGTCTTCCATTTACTCTCATCATCAGCCTTGGCGGTGTGGAGTGGGGGAAAATGCCTCTAAATCATCTTCAGCTGATCAGTTAAATGGTTCAATCGTGAATGGTATCACGCGGTCTGAGACCAATGATAAGTCAGGTGAAGGTGTTGCCAAAGAATACCAAAACATCAAACATGCCGTGTTGTCAACCCCATTTACCATGGACAAACATCTTGCTCCAAATCCCCAGATGGAACTTGTTGGTCATTCAGTTGTTTTAACATCTCCTTATTCAGATGCACAGCATGGTCAAATCTTGACTACTTACGGGCAACAAGTTATGATAAACCCTCAATTGTACGGAATGTATCATGCTAGAATGCCTTTGCCACCTGAAATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCACGTGCTAAGGCTGAGCTTGAAAAGAAAGTAATCAAAAACAGGAAGCCATACCTCCATGAATCCCGTCACCTTCATGCCATGAGAAGGGCTAGAGGCAATGGTGGTCGCTTTCTCAACAAAAAGAAGCTCGAAAATTACAATTCTGATGCCACTTCAGACATTGGGCAAAATACTGGTGCAAACCCCTCAACAAACTCACCTAACACTCAACATTTGTTCACCAACAATGAGAATCTAGGCTCATCAAATGCGTCACAAGCCACGGTTCAGGACATGCACAGAGTGGAGAGTTTCAATATTGGTTACCATAATGGAAATGGTCTTGCAGAACTGTACCATTCACAAGCAAATGGAAAAAAGGAGGGAAACTGCTTTGGTAAAGAGAGGGACCCTAATAATGGGGCTTTCAAATGA	915	0.4372	MPGKADTDDWRVERGEQIQFQSSIYSHHQPWRCGVGENASKSSSADQLNGSIVNGITRSETNDKSGEGVAKEYQNIKHAVLSTPFTMDKHLAPNPQMELVGHSVVLTSPYSDAQHGQILTTYGQQVMINPQLYGMYHARMPLPPEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKNRKPYLHESRHLHAMRRARGNGGRFLNKKKLENYNSDATSDIGQNTGANPSTNSPNTQHLFTNNENLGSSNASQATVQDMHRVESFNIGYHNGNGLAELYHSQANGKKEGNCFGKERDPNNGAFK	304

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma13g01770	304	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	23	297	IPR001289	GO:0003700\|GO:0006355
	Gma13g01770	304	SMART	cbf3	146	207	IPR001289	GO:0003700\|GO:0006355
	Gma13g01770	304	MobiDBLite	consensus disorder prediction	215	253	-	-
	Gma13g01770	304	MobiDBLite	consensus disorder prediction	36	63	-	-
	Gma13g01770	304	ProSiteProfiles	NF-YA/HAP2 family profile.	147	207	IPR001289	GO:0003700\|GO:0006355
	Gma13g01770	304	PRINTS	CCAAT-binding transcription factor subunit B signature	150	172	IPR001289	GO:0003700\|GO:0006355
	Gma13g01770	304	PRINTS	CCAAT-binding transcription factor subunit B signature	181	204	IPR001289	GO:0003700\|GO:0006355
	Gma13g01770	304	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	149	204	IPR001289	GO:0003700\|GO:0006355
	Gma13g01770	304	MobiDBLite	consensus disorder prediction	36	66	-	-
	Gma13g01770	304	ProSitePatterns	NF-YA/HAP2 subunit signature.	152	172	IPR018362	GO:0003677\|GO:0016602
	Gma13g01770	304	PANTHER	TRANSCRIPTION FACTOR Y SUBUNIT A-1, PUTATIVE-RELATED	23	297	-	-
	Gma13g01770	304	Gene3D	-	147	208	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma13g01770	Gma-Chr13	32959147	32965500	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Gma13g01770		CBFB_NFYA	1.3e-26	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma13g01770	13	32959147	32965500	Gma13g01770	13	32959147	32965500	ECH