Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01765 ATGGAGTCCTCTGTTGATGCATTAGCTTCAAAACGCTCTCGTTCAAGTGGATTTTCCCCTGACCCTGACAGAGGCAAAAGACAGAAGTTATCAAATGTTGTGGAGCACGGGAATCCATTCGCAGTTACTGATGTTCTGGATCGTATAGAGCATGGAAAATATGGAAGTGTCACGAAGGATATAGAGGCCCTTTTTGCCCGAAGAATGAAGGTACTTGGACCTTACTTAGCAAAGTATCCCAAACTTAATCAATTGATCCATGCGGTAATCGACCGCGATGAAGAAATTCTtaagtcagaagatcaacaagttactggtttgacacatcaaaatgtcatagatttggaaactcctaagttagaagttcaacagattactggtttgacacttcaaaatgtcatagatttggaGGGGGAAAACACTGAGAAGGATGTTCATGCAGCACAAATTCATGGTTTGATTCACATTGAttcagatgaggaagatgatggagataaaaaatctattgttccatatgaagcttcagatgaggaagatggtagagataaaaaaattattgttccatatgaagcttcagatgaggaagatggtagagataaaaaaattattgttccatatgaagcttcagatgaggaagatggtagagataaaaaaattattgttccatatgaagcttcaaatgaggaagatgatagagacaaaaaaTCTTTTGTTGCTTTTCATGAAGTTGTGTCGCCAAGACTAGTTGCACCATCTCCTGCGTCTAAGACGGTTGAGTACCACACTCCCATTCCTTACCATGGAGAAACTGAAGATCTAAAAATTGAGACAAGTATATCTGGAAAAGATAACACTAGGGGAGATAAAGGTGTTTATATTGGTGTACAGGAGGTAGAGGATCATCAGGGTGATACTGCAGATGATGATGGTCTAGAAGATATTTGGAAGGAGATGTCAATGGCAATAGAATGTTCCAAAGATACTTACGTGAATCCTCTGCCAGATGAAGAAGTAAAAGAAGATGAGGACTGTGATCATTCTTTTATTTTAAAAGATGATCTTGGCTATGTTTGTCGTGTTTGTGGCATTATTGACCGGGGAATTGAAACCATATTTGAGTTCCAGTACAAGGCTAAACGGAGCACAAGGACTTATGCATCTGATTCACGGAATACCAAAGGAAAAGCAGATGCATTTGGAATTAATGTTGCTGAAGATGATCTCATAGTAACTGAAATCTCAGCACATCCGAGACACATGAAACAGATGAAACCCCATCAAGTTGAAGGATTCAATTTTCTTGCTAGAAATCTTGTGGGTGACGATCCTGGTGGGTGCATCTTGGCCCATGCTCCTGGATCTGGGAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTGGGAAAGTATCCTAATGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTATCAACATGGAAAAAGGAGTTTCAAACATGGCAAGTGGAGGACATTCCTCTATATGACTTTTACACAGTGAAGGCAGATAGTAGAAGTCAACAACTGGAAGTGTTGAAGCAATGGGTGGAGCATAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCTTCTGTTGTCTGTGATAATGGGGCCAGCAGTGAATCTTTATCTTGCAAAAAGATTCTACTGAATGTTCCTTCAATTCTTATTTTAGATGAGGGGCACAATCCGAGGAATGAAAACACGGATATGGTACAGTCCCTTGTGGAAGTTCATACCCGTCTAAAAGTTGTACTGTCGGGAACACTTTACCAAAATCATGTCAAGGAGGTGTTTAACATCTTAAATCTTGTTCGGCCAAAATTTTTGAAGATGGAAACATCTAAGCCTATTGTGAGGCGCATTCGTAGTAGAGTTCACACACCGGGGGTGAGAAGCTTCTATGATTTAGTTGAAAACACTTTGGAGAAGGACACGCATTTTAAAACGAAAGTAGCTGTTATTCAAGATTTGCGAGAGATGACGAGCAAGGTACTTCACTATTATAAAGGAGATTTCCTTGATGAGCTTCCTGGTCTTGTTGATTTTACTGTGGTGCTCAATCTTAGCCCTAGACAGAAGCCCGAAGTTGAAAAATTAAAAAGGTTATCTGGAAATTTTAAGAAATCTTCTGTAGGCAGTGCTGTCTATTTGCACCCTAAATTGAAACCTTTAGCTGAAAAAAGTGAAAAAGGTATATCTGATAACATGATTGATGCTCTGATAGAGAAATTGGATGTGAGAGATGGTGTGAAGTCCAAATTCTTTCTGAACATGCTAAATTTGTGTGAATCAGCTGGGGAGAAGCTTCTAGTTTTCAGTCAGTATCTGTTACCTTTGAAATATTTAGAAAGGTTAACTATGAAATGGAAAGGCTGGAGTCTAAAAAGAGAAATCTTTGTAATCTCTGGAGAAACAAGCTCTGAGGATCGAGAATGGTCAATGGAAAGATTTAACAACTCTCCTGATTCCAAAGTCTTCTTTGGCTCGATAAAGGCTTGTGGGGAGGGCATATCATTGGTCGGGGCATCCCGCATAATTATTTTGGATGTTCATCTCAATCCTTCTGTTACTCGCCAAGCTATTGGTCGAGCATTCAGACCAGGCCAGAAGAAGAAAGTCTTTGTGTATCGATTGGTATCTGCTGATTCTCCTGAAGAGGAAGATCACAGTACTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAACGAGTATTGTGGTGATCAAGCTTTTGAAGTTGAGGAAGTTGGGGTGAAAGAGTGTGATGATCTATTTCTTGAAAGTCCATTGTTAGGGGAGGATGTAAAAGCTTTGTATAAAAGGTGA 2862 0.3508 MESSVDALASKRSRSSGFSPDPDRGKRQKLSNVVEHGNPFAVTDVLDRIEHGKYGSVTKDIEALFARRMKVLGPYLAKYPKLNQLIHAVIDRDEEILKSEDQQVTGLTHQNVIDLETPKLEVQQITGLTLQNVIDLEGENTEKDVHAAQIHGLIHIDSDEEDDGDKKSIVPYEASDEEDGRDKKIIVPYEASDEEDGRDKKIIVPYEASDEEDGRDKKIIVPYEASNEEDDRDKKSFVAFHEVVSPRLVAPSPASKTVEYHTPIPYHGETEDLKIETSISGKDNTRGDKGVYIGVQEVEDHQGDTADDDGLEDIWKEMSMAIECSKDTYVNPLPDEEVKEDEDCDHSFILKDDLGYVCRVCGIIDRGIETIFEFQYKAKRSTRTYASDSRNTKGKADAFGINVAEDDLIVTEISAHPRHMKQMKPHQVEGFNFLARNLVGDDPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWVEHKSILFLGYKQFSSVVCDNGASSESLSCKKILLNVPSILILDEGHNPRNENTDMVQSLVEVHTRLKVVLSGTLYQNHVKEVFNILNLVRPKFLKMETSKPIVRRIRSRVHTPGVRSFYDLVENTLEKDTHFKTKVAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVVLNLSPRQKPEVEKLKRLSGNFKKSSVGSAVYLHPKLKPLAEKSEKGISDNMIDALIEKLDVRDGVKSKFFLNMLNLCESAGEKLLVFSQYLLPLKYLERLTMKWKGWSLKREIFVISGETSSEDREWSMERFNNSPDSKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLVSADSPEEEDHSTCFKKELISKMWFEWNEYCGDQAFEVEEVGVKECDDLFLESPLLGEDVKALYKR 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01765 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 562 915 IPR027417 -
Gma13g01765 953 Pfam SNF2-related domain 443 652 IPR000330 GO:0005524|GO:0140658
Gma13g01765 953 MobiDBLite consensus disorder prediction 17 31 - -
Gma13g01765 953 Pfam Helicase conserved C-terminal domain 766 876 IPR001650 -
Gma13g01765 953 CDD SF2_C_SNF 751 888 - -
Gma13g01765 953 MobiDBLite consensus disorder prediction 1 16 - -
Gma13g01765 953 MobiDBLite consensus disorder prediction 1 33 - -
Gma13g01765 953 Gene3D - 392 641 IPR038718 -
Gma13g01765 953 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 437 616 IPR014001 -
Gma13g01765 953 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 23 953 IPR044567 GO:0080188
Gma13g01765 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 403 635 IPR027417 -
Gma13g01765 953 SMART ultradead3 419 629 IPR014001 -
Gma13g01765 953 Gene3D - 686 941 IPR027417 -
Gma13g01765 953 PANTHER PROTEIN CHROMATIN REMODELING 35 23 953 - -
Gma13g01765 953 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 763 931 IPR001650 -
Gma13g01765 953 MobiDBLite consensus disorder prediction 156 218 - -
Gma13g01765 953 SMART helicmild6 792 877 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01765 Gma-Chr13 32906874 32913049 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma13g01765 SNF2_N 2.2e-19 CL0023