Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01729 ATGGCTGAAACCCTAATTTTCTCCGTCCCCACCGGAGAACCTTCTTTCTTAATATTCCTAAATCGCACCTTTCTCTCCATCAAACGACGCCTCCTCGCTCGCATTCTTCGCTACCAAAACGACGCCGTTGCACACTCCAGGATTTTCCGTGAAGTGGATGATTCGGCCACTGAGAAAAAGTGCGAATTAAACGCCGGAGATTGTTTGTCAAACGACGGCGGGAATGGACGACACGCCGTTTTCAATGCGCTGGATACTATGCTTAAGGACAGTTTAGAGCGTCTTAAGATGATGAGGGAAAACTTATGTCTGGTAAAGACTGGTCTAACTATAGGATATGCATGTGAATCCAAGTATGCTGAAGATACAGCTACTATTAGGCGTTTGTGCTTAGATGGTAAGCTGGGAGCAGCTGTTTGGCTTTGGGGGAAAATGGCGCAGAAAGGTGTCGTTTCTGATGTGTTTACCCACAACCATATTGTAAATGGGCTGTGCAAAATTGGGCTTCTGGACAAGGCGGATTTGGTTGTTAGAGAGATGTTAGAATTTGGTCCTCGTCCCAACTGTGCCACTTATAATACTTTGATTAAGGGCTATTGTGCTGTTAATGGTGTGGATAGGGCTTTGTATCTGTTCTCCACCATGACCTATGCTGGGATTCTGCCAAACAGGGTTACTTGTAGGATACTGGTGCATGCACTGTGTGAGAAAGGTCTTCTTATGGAAGCTAAAAGGATGCTTGAAGAAGTATTAAAGGATGATGACGAGAAAGACATACCTGATTTAGTTATCTCTACTGTATTTATGGATAGCTACTTTAAGGATGGAGCAATTATTCAGGCTCTCAATCTTTGGAATCAGATGCTTCAAAATTGTACTAAAGTTGATGTTGTAGCTTATAATGTTCTTATCAATGGATTTTGCAAGAGTCAACAAATGAACCTTGCATATGGATATGCATGTGAGATGTTTAAGAAAGGTTTACTTCCTGATGCTTTTACTTATAATATTATTATTGGTGCTCTTTGCAAGGAAGGAAAAATTAGTGAGGCTTGCTATACCGTTGGAGTTATGTCTAATATGGGAATTATGCCTGATCAAATTACATACCAGATTGTGATTCGAGGCCTTTGTTTTGCTGGAGAGATTGTTAGAGCAAAACACTTGCTTTGGTGTATGTTGAACAATTTAATGGTGCCCAAGCCTTTAATATGGAATCTAATAATTGACTTATATGGGAGATATAATGATCTTAGTAATGCATTTTTTACAAGAGATCAGATGCTGTCTTTCGGTGTTTGCCCTAATGTATTTACTTATAATGCTTTAATTCTTGCACAAGTGAAGAGTGGAAATTTCCATGGTGCTTGCTCTCTGAAGGAAGAGATGATTTCGAAATGTCTCTTTCCTGATGTGGTTACCTATAATTTGTTGATAGGTGCTGCTTGTAATATAGGACGTCTTGATTTTGCTCTTCTATTACATGATCAGATGGTGCAGAGGGGTTATGAACCAGATTTAATAACTTATACTGAACTTGTTAGGGGGTTCTGTATAAGAGGTAAGATGAAAGAGGCAGAAGAGCTCTATGCCAAAATACTAAAATCTGGTTTGTTGAATGATCATGTTCCAGTTCAGATTCTTTTTAATAAGTACTGCAAATTGAAGGAACCAGTTATAGCATTTAACTTTTATCAAGACTGGTTGGAAAGTAAAAAGGGCAGTCTTCCTTGA 1734 0.3945 MAETLIFSVPTGEPSFLIFLNRTFLSIKRRLLARILRYQNDAVAHSRIFREVDDSATEKKCELNAGDCLSNDGGNGRHAVFNALDTMLKDSLERLKMMRENLCLVKTGLTIGYACESKYAEDTATIRRLCLDGKLGAAVWLWGKMAQKGVVSDVFTHNHIVNGLCKIGLLDKADLVVREMLEFGPRPNCATYNTLIKGYCAVNGVDRALYLFSTMTYAGILPNRVTCRILVHALCEKGLLMEAKRMLEEVLKDDDEKDIPDLVISTVFMDSYFKDGAIIQALNLWNQMLQNCTKVDVVAYNVLINGFCKSQQMNLAYGYACEMFKKGLLPDAFTYNIIIGALCKEGKISEACYTVGVMSNMGIMPDQITYQIVIRGLCFAGEIVRAKHLLWCMLNNLMVPKPLIWNLIIDLYGRYNDLSNAFFTRDQMLSFGVCPNVFTYNALILAQVKSGNFHGACSLKEEMISKCLFPDVVTYNLLIGAACNIGRLDFALLLHDQMVQRGYEPDLITYTELVRGFCIRGKMKEAEELYAKILKSGLLNDHVPVQILFNKYCKLKEPVIAFNFYQDWLESKKGSLP 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01729 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Gma13g01729 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Gma13g01729 577 TIGRFAM PPR: pentatricopeptide repeat domain 298 332 IPR002885 -
Gma13g01729 577 TIGRFAM PPR: pentatricopeptide repeat domain 191 223 IPR002885 -
Gma13g01729 577 TIGRFAM PPR: pentatricopeptide repeat domain 155 189 IPR002885 -
Gma13g01729 577 TIGRFAM PPR: pentatricopeptide repeat domain 508 538 IPR002885 -
Gma13g01729 577 TIGRFAM PPR: pentatricopeptide repeat domain 333 366 IPR002885 -
Gma13g01729 577 TIGRFAM PPR: pentatricopeptide repeat domain 438 472 IPR002885 -
Gma13g01729 577 TIGRFAM PPR: pentatricopeptide repeat domain 404 437 IPR002885 -
Gma13g01729 577 TIGRFAM PPR: pentatricopeptide repeat domain 473 506 IPR002885 -
Gma13g01729 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Gma13g01729 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Gma13g01729 577 Gene3D Tetratricopeptide repeat domain 398 575 IPR011990 GO:0005515
Gma13g01729 577 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 15 572 - -
Gma13g01729 577 Pfam PPR repeat 266 291 IPR002885 -
Gma13g01729 577 Pfam PPR repeat 438 466 IPR002885 -
Gma13g01729 577 Pfam PPR repeat 404 433 IPR002885 -
Gma13g01729 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Gma13g01729 577 Pfam PPR repeat 148 180 IPR002885 -
Gma13g01729 577 Pfam PPR repeat 361 390 IPR002885 -
Gma13g01729 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Gma13g01729 577 Gene3D Tetratricopeptide repeat domain 67 182 IPR011990 GO:0005515
Gma13g01729 577 Gene3D Tetratricopeptide repeat domain 321 396 IPR011990 GO:0005515
Gma13g01729 577 Gene3D Tetratricopeptide repeat domain 253 320 IPR011990 GO:0005515
Gma13g01729 577 Gene3D Tetratricopeptide repeat domain 183 252 IPR011990 GO:0005515
Gma13g01729 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Gma13g01729 577 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 15 572 - -
Gma13g01729 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Gma13g01729 577 Pfam PPR repeat family 296 344 IPR002885 -
Gma13g01729 577 Pfam PPR repeat family 187 235 IPR002885 -
Gma13g01729 577 Pfam PPR repeat family 470 518 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01729 Gma-Chr13 32477422 32484751 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01729 13 32477422 32484751 Gma15g02274 15 47597900 47605488 GST