Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01660 ATGAAGGGAAGAAGTGATGGAGATGAACACTTGATGCTAGCAAGAATGGTGAATAGCAACTATTTCTCCTTCTTCCTCCACGGCCTCCTCCTCCTTTCTCTCAACTCCTCTTTCTTTTCTTTATCATTTTTGGTTTTGAATGGTGGAGAGAATGAGTGTAGAGAAAGGTTTAGTGTGGGTTTGTGTTGTGTGGCCGTTGGGTGCAAGCTTTGGGTAGGTAGTGGATTACACTTGTCATTAGGAACAGGGTTTTCAGTTTTCACTGTTCCATTAAGTTTCCGAGCTCAATTCAGCTTCCGATTCGCCGCGCGCAAAACGACTTCGTTTTTGGATTTTGGCGTCGCGTCCTATTCAGAAGCTATATACTATAAGATGAGACGAATGAAGAAAGATATTGAAGATGAGGTGCTTCCCAATGATATGAGTGGGGCACAGTTGAATGATGAGAGTTATGAAGGAAGTGCTGGCATTGTTCTGAAGAAGGGGCCATGGACATCAACTGAAGATGATATTTTGGTGGATTATGTCAAGAAGCATGGGGAGGGGAACTGGAATGCTGTTCAGAAGCACACCGGGCTGTTTCGTtgcggaaaaagttgtcggctgcggtgggccaatcacctaaggccaaatttaaagaaaggggcgtttgccgcagaagaggagcggctgattgctgaacttcatgccaaaatgggaaacaaatGGGCACGCATGGCAGCTCATTTGCCTGGTCGGACAGATAATGAGATAAAGAACTACTGGAACACCCGGATCAAAAGGCGTCAACGGGCTGGGTTGCCACTTTATCCTCCAGAAGTGAGTTTGCATGCTTTGCAAGAGAGTCAGCATAGCCAAAGCACTGGTGGACTTAATGGTGGCGATAAAATGCATCCTGATTTCTTGCAGAAAAACAGTTATGAGATACATGATGCTATATTTGACAGTCTAAAGGATAATCAGGGAATCTTACCTTATGTGCATGAGCTTTCTGATATTTCTGTTTATGGCAATAAGCTAAAAGGTCTTGATTCTTCTCAGTATTGTAGTTTTGTGCCACCAACATCACCTAAGCGTAAGCGTCTTAAAGAGTCAACAATACCATTTATTGATTCCTGTGCTATGAAAAAAAAGGATTTATATCCATTTGATCAAATTCAAGACAATAATTCTGATAAGATTGCACAATCATTTGGAATGCAAGCACCCCTTGATCCTGGTCTCTCCTCGCACAGTTCAATGTGTTACAGCCATTCACTTTCAAATGGCAACTCCTCTACTTCTAAGCCTTATGAGGCTATGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAACTCGATTTAGGTAGCTGGGGTTCATCTCCTCCACCTTCTTTGCTCGAGTCAGTTGATGATTTCCTTCAGTCTCCTACAGCAATTAGTACACTGGAGTCAGATTGTTCTTCTCCACAAAATAGTGGCCTTCTGGATGCTTTACTTTATCAGGCAAAGACTATGAGCAGTTCAAAGAACCATTGTTCTGATAAGAGTTCAAATTCTTCTACTGCAACCCCTGGTGACAGAGCTGACAGCTCTATTTTGAATGTGTACGAGACAGAATGGGAAGATTATGCTGACCCTGTATCTCCCTTTGGTGCCACTTCAATATTGAATGAGTGCCCAGCTCTTAGAGCCAATGCAAATTCATTGAACGGACAGCTGCCAGTTCAGACCTTTACTGGCAACCTTCCGAAATTAGAATCTGTTGACCAGGTTTGGACTCCTAACAATGAAAATCTAACCTTGTCCCTGTTGAATATTACTCGTCCAGACTTCTTGCTTGCTTCAGATTGGTATGACCTAGGTTCTGGACATTGCAAGAACCAAACCATCACAACTGATGCTGCAACGGCCTTTCTTGGAGATGATTTAGCCACTGACCTCAAGCATATGACTGCTGGAATTTCTAAAACTATGTTTGAAAATCCATTCCAGCCCCTCTAA 1983 0.4014 MKGRSDGDEHLMLARMVNSNYFSFFLHGLLLLSLNSSFFSLSFLVLNGGENECRERFSVGLCCVAVGCKLWVGSGLHLSLGTGFSVFTVPLSFRAQFSFRFAARKTTSFLDFGVASYSEAIYYKMRRMKKDIEDEVLPNDMSGAQLNDESYEGSAGIVLKKGPWTSTEDDILVDYVKKHGEGNWNAVQKHTGLFRCGKSCRLRWANHLRPNLKKGAFAAEEERLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSLHALQESQHSQSTGGLNGGDKMHPDFLQKNSYEIHDAIFDSLKDNQGILPYVHELSDISVYGNKLKGLDSSQYCSFVPPTSPKRKRLKESTIPFIDSCAMKKKDLYPFDQIQDNNSDKIAQSFGMQAPLDPGLSSHSSMCYSHSLSNGNSSTSKPYEAMKLELPSLQYPELDLGSWGSSPPPSLLESVDDFLQSPTAISTLESDCSSPQNSGLLDALLYQAKTMSSSKNHCSDKSSNSSTATPGDRADSSILNVYETEWEDYADPVSPFGATSILNECPALRANANSLNGQLPVQTFTGNLPKLESVDQVWTPNNENLTLSLLNITRPDFLLASDWYDLGSGHCKNQTITTDAATAFLGDDLATDLKHMTAGISKTMFENPFQPL 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01660 660 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 125 650 - -
Gma13g01660 660 Gene3D - 160 213 - -
Gma13g01660 660 Pfam Myb-like DNA-binding domain 214 257 IPR001005 -
Gma13g01660 660 Pfam Myb-like DNA-binding domain 161 208 IPR001005 -
Gma13g01660 660 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 156 208 IPR017930 -
Gma13g01660 660 ProSiteProfiles Myb-like domain profile. 209 259 IPR001005 -
Gma13g01660 660 ProSiteProfiles Myb-like domain profile. 159 208 IPR001005 -
Gma13g01660 660 SUPERFAMILY Homeodomain-like 160 255 IPR009057 -
Gma13g01660 660 CDD SANT 219 257 IPR001005 -
Gma13g01660 660 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 125 650 - -
Gma13g01660 660 CDD SANT 163 208 IPR001005 -
Gma13g01660 660 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 263 IPR017930 -
Gma13g01660 660 MobiDBLite consensus disorder prediction 502 522 - -
Gma13g01660 660 Gene3D - 216 262 - -
Gma13g01660 660 SMART sant 213 261 IPR001005 -
Gma13g01660 660 SMART sant 160 210 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01660 Gma-Chr13 31464941 31475364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01660 156 649 MYB Transcription Factor Family AT5G06100 44.356 1.23e-119 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma13g01660 Myb_DNA-binding 3.2e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01660 13 31464941 31475364 Gma15g02165 15 44222205 44224929 GST
Gma04g01155 04 16454365 16457691 Gma13g01660 13 31464941 31475364 PCT
Gma06g02777 06 51607124 51610554 Gma13g01660 13 31464941 31475364 PCT
Gma13g01660 13 31464941 31475364 Gma04g01155 04 16454365 16457691 PCT
Gma13g01660 13 31464941 31475364 Gma06g02777 06 51607124 51610554 PCT