Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01649 ATGCCCCTCCACCTCCTACTCCATCACCACCATCTTCAACACATTCCCCTCCTCCTCCTCCTCCTTCTCCAACACCACCTCCAGCACGTGCCCCTTCTCCCCCTCCGCCTCCACCACCTTCATCACCCTCTTCAGCATGCAAGCAAATTCTCCATCAAACAAAGCCTTAAACAAGCCAAGAAACTAGTCAAGGTCTTCAAAAACTTCCTCACAAAACACAAGTCATCCTCTTCCCTCAACACCGCAGAAATCGCAGCGTTGGAGGACTGCAGCGAACTCAACAAGCTCAGTATTGATTACTTGGAGTCGGTCTCAATAGAGCTAAAGTCGATCGACTCCAATAACACTGAGCTGGTTGAGAAGATTGAGACGTATCTCAGCGCTGTGGCCACTAACCACTACACTTGCTATGATGGGTTGGTGGTGATCAAGAGCAACATTGCCAATGCTATTGCTGTGCCTCTCAAGAATGTCACCCAATTATACAGTGTGTCACTTGGGTTGTTCACGCAGGCTCTGAAGAAAAACCTCAAGAAGCATAAGACACGCAAACATGGTCTTCCCACCAAGGACTACAAGGTCAGGCAGCCATTGAGAAAACTCATCAAGCTTCTTCACACAAAGTACAGTTGCACAGGATCATCCAACTGTAGTACTAGAAGTGAAAGGATTCTTCAAGAAAGCGAGAACAAAGGAGTTCTTCTAAAAGAGTTTGCGATTGTTAGCCTTGATGGCACAGAAAACTTCACCTCTATTGGAGATGCTATTGCCGCTGCACCCGATAATTTGAGGCCAGAAGATGGCTATTTTCTTATCTATGCCAGAGAAGGAAACTATGAGGAATATGTCACTGTTCCCATTCAAAAGAAAAATATCTTGCTTATTGGTGATGGCATCAACAAGACTTGCATGACAGGAAATCATAGTGTCGTAGATGGTTGGACCACTTTCAATTCTTCAACCTTTGctgtctctggagaaagatttgtagcagtggatgtcacattcagaaacacagcagTTCAAAGTGTTTTTGAGACTAAAGTACAAATTTTCTTGTTCTTTTGTGCCGGTGCTGCTGAAGCATCTTTTCTCTTCCTATAA 1104 0.4257 MPLHLLLHHHHLQHIPLLLLLLLQHHLQHVPLLPLRLHHLHHPLQHASKFSIKQSLKQAKKLVKVFKNFLTKHKSSSSLNTAEIAALEDCSELNKLSIDYLESVSIELKSIDSNNTELVEKIETYLSAVATNHYTCYDGLVVIKSNIANAIAVPLKNVTQLYSVSLGLFTQALKKNLKKHKTRKHGLPTKDYKVRQPLRKLIKLLHTKYSCTGSSNCSTRSERILQESENKGVLLKEFAIVSLDGTENFTSIGDAIAAAPDNLRPEDGYFLIYAREGNYEEYVTVPIQKKNILLIGDGINKTCMTGNHSVVDGWTTFNSSTFAVSGERFVAVDVTFRNTAVQSVFETKVQIFLFFCAGAAEASFLFL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01649 367 Pfam Plant invertase/pectin methylesterase inhibitor 47 167 IPR006501 GO:0004857
Gma13g01649 367 PANTHER PECTINESTERASE 48 341 - -
Gma13g01649 367 PANTHER PECTINESTERASE 48 341 - -
Gma13g01649 367 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 171 IPR035513 -
Gma13g01649 367 SMART PMEI_2 43 168 IPR006501 GO:0004857
Gma13g01649 367 SUPERFAMILY Pectin lyase-like 238 340 IPR011050 -
Gma13g01649 367 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 172 IPR035513 -
Gma13g01649 367 Pfam Pectinesterase 239 340 IPR000070 GO:0030599|GO:0042545
Gma13g01649 367 Gene3D - 238 362 IPR012334 -
Gma13g01649 367 CDD PMEI-like_3 49 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01649 Gma-Chr13 31317332 31322653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01649 48 340 Carbohydrate Esterase AT3G10720 52.525 7.99e-97 298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02792 06 51767733 51773098 Gma13g01649 13 31317332 31322653 PCT
Gma13g01649 13 31317332 31322653 Gma06g02792 06 51767733 51773098 PCT