Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00616 ATGCCAAATCAAAACCCTATTTTGCATTGCACCTTCCTCTTATTACTCTTGCATCTTCTACTGAATGCATCTCCAATGAGATGCAAATCAACTATAGAGCCATGCTCCAACTATGATTCATGCAATGCTCTTCTTGGCTACACACTTTACACTGACCTCAAGGCCTCTGAGGTTGCTTCTCTCTTTCAAATAGACCCTATTGCACTTCTCACTGCCAATGCCATTGACATCTCTTACCCTGATGTAGAGCACCACATTCTCCCTTCCAAGCTCTTCCTCAAAGTCCCTATCACCCGTTCTTGTGTTGATGGTATTAGAAAATCAATGTCTACTCATTATAGGACTAGACCTTCCGATACTCTCTCTTCCATTGCAAATTCAATATATGGGGGTTTGGTGTCCCCTGATCAGCTTAGGGAGGCTAATTCCATAGGTGATGATCCTTCAGTGCTTGATGTGGGTCTGAACCTTGTGGTGCCACTTCCATGCACTTGCTTCAATGAGAGTGATAACTCTTTGCCTTCAATTTACCTTTCCTATGTGGTTCAGCCAATTGATACATTGGCTGCAATTGCAGCTAGATATTTCACCACTTTTACTGATTTGATGAATGTCAATGACATGGGGACTACAGCTATCTCTGATGGTGACATTCTTGTTGTTCCAATACCTGCTTGTGCATCAAATTTTCCAAAATATGCTTCTGATTATGGCTTACTTGTCCCTAACGGAAGCTACACCATATTACTGCTGGTCACTGTTTTATACTGTATGCCCTCTTCTCTAGCTGTCTCTTGCTCCAGCATGCGATGCAAAAACAGCAATCTTATGCTTGGGAATGTTACTGTGCAACGAAGTAGTTCTGGTTGCAATGTTACGTCTTGCAATTATGATGGTTTTGTTAGTGGCACCACAATAACATCGTTGTCCCCATCTCTTCAGCCTCGTTGTCCAGGACTGCAGCGATTCCATCCACTTATAGCACCACCTACATCTGTTATAAGGGAATCGGAATTTGCCTTTACACCATCACTATCACCATCACAGTCATCGCAATCACAAGAAACCGGTCTAACAGCTCCTAAGTCTTCGGTCATGCCTGCAACCAGATCATTTCCAGGATTCTCACCTGCAAATGGCCCTGTTAGTAGGATTGCTTCCGGTGCTTCTGCTACTCCCTCCTTGGCAAATCCGATGCTTGTTTTGAGATTTGCATTTATGTTATTGCTTGTAAAGTTGTTGATCCCTTTGGCTTTGTAA 1260 0.4302 MPNQNPILHCTFLLLLLHLLLNASPMRCKSTIEPCSNYDSCNALLGYTLYTDLKASEVASLFQIDPIALLTANAIDISYPDVEHHILPSKLFLKVPITRSCVDGIRKSMSTHYRTRPSDTLSSIANSIYGGLVSPDQLREANSIGDDPSVLDVGLNLVVPLPCTCFNESDNSLPSIYLSYVVQPIDTLAAIAARYFTTFTDLMNVNDMGTTAISDGDILVVPIPACASNFPKYASDYGLLVPNGSYTILLLVTVLYCMPSSLAVSCSSMRCKNSNLMLGNVTVQRSSSGCNVTSCNYDGFVSGTTITSLSPSLQPRCPGLQRFHPLIAPPTSVIRESEFAFTPSLSPSQSSQSQETGLTAPKSSVMPATRSFPGFSPANGPVSRIASGASATPSLANPMLVLRFAFMLLLVKLLIPLAL 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00616 419 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 21 400 - -
Gma13g00616 419 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 21 400 - -
Gma13g00616 419 SUPERFAMILY LysM domain 178 223 IPR036779 -
Gma13g00616 419 Gene3D LysM domain 168 230 IPR036779 -
Gma13g00616 419 Gene3D LysM domain 98 167 IPR036779 -
Gma13g00616 419 Pfam LysM domain 113 160 IPR018392 -
Gma13g00616 419 Pfam LysM domain 180 222 IPR018392 -
Gma13g00616 419 ProSiteProfiles LysM domain profile. 111 159 IPR018392 -
Gma13g00616 419 CDD LysM 179 221 IPR018392 -
Gma13g00616 419 SMART LysM_2 179 222 IPR018392 -
Gma13g00616 419 SMART LysM_2 112 160 IPR018392 -
Gma13g00616 419 CDD LysM 111 159 IPR018392 -
Gma13g00616 419 ProSiteProfiles LysM domain profile. 178 221 IPR018392 -
Gma13g00616 419 MobiDBLite consensus disorder prediction 343 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00616 Gma-Chr13 19452332 19455206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00616 12 394 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 60.859 4.97e-166 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00616 - - pvu:PHAVU_008G163700g 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00616 13 19452332 19455206 Gma13g00616 13 19452332 19455206 ECH