LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma12g00330	ATGCGAACCCTTTGCGACGTATGCGAGAGCGCCGCTGCCATTGTCTTCTGCGCCGCTGATGAGGCTGCTCTCTGCTCCGCTTGTGACCACAAGATCCATATGTGTAACAAACTTGCTAGTAGACACGTTCGGGTTGGCCTTGCTGACCCCACTGATGTTCCACGCTGTGACATATGTGAAAACGCACCTGCTTTCTTTTACTGTGAGATAGATGGTAGTTCGCTGTGTCTGCAATGTGATATGATTGTGCATGTTGGTGGTAAAAGAACTCATGGAAGATATCTTCTATTGAGGCAAAGAGTTCAGTTTCCATGTGATAAACCTGCCCAAATGGAAGAACTAGGGCTGCAACCTATGGATCAAAATGAATCAAGGAGGGATGAAAGTCAGTCACTCAAGCTAAAAATAAGAGATAGTCAGCAGAATCACAGTGTCTCACCTGTTCCAAGACAAGAAAATAATATTGATGGTCATGGAAAAATGGATAAAAAGTTAATTGATCTTAATACGAGGCCACTGCGGTTAAATGGAGCAGCACCAAACAACCAGGAACGAGGTATGGATATTTTAAGAGGCAATAATCATAAATCTGCGAGTGTGCCACCAGTAGAATCCTTCAAACAAGAGTCTGAGAAGTAA	639	0.4366	MRTLCDVCESAAAIVFCAADEAALCSACDHKIHMCNKLASRHVRVGLADPTDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHGRYLLLRQRVQFPCDKPAQMEELGLQPMDQNESRRDESQSLKLKIRDSQQNHSVSPVPRQENNIDGHGKMDKKLIDLNTRPLRLNGAAPNNQERGMDILRGNNHKSASVPPVESFKQESEK	212

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma12g00330	212	CDD	Bbox1_BBX-like	4	47	-	-
	Gma12g00330	212	MobiDBLite	consensus disorder prediction	136	212	-	-
	Gma12g00330	212	MobiDBLite	consensus disorder prediction	155	169	-	-
	Gma12g00330	212	ProSiteProfiles	Zinc finger B-box type profile.	51	96	IPR000315	GO:0008270
	Gma12g00330	212	SMART	bboxneu5	1	47	IPR000315	GO:0008270
	Gma12g00330	212	SMART	bboxneu5	51	96	IPR000315	GO:0008270
	Gma12g00330	212	MobiDBLite	consensus disorder prediction	136	151	-	-
	Gma12g00330	212	ProSiteProfiles	Zinc finger B-box type profile.	1	47	IPR000315	GO:0008270
	Gma12g00330	212	PANTHER	B-BOX ZINC FINGER PROTEIN 19	1	212	-	-
	Gma12g00330	212	CDD	Bbox1_BBX-like	56	96	-	-
	Gma12g00330	212	Gene3D	Classic Zinc Finger	2	92	-	-
	Gma12g00330	212	Pfam	B-box zinc finger	53	90	IPR000315	GO:0008270
	Gma12g00330	212	PANTHER	B-BOX ZINC FINGER PROTEIN 22	1	212	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma12g00330	Gma-Chr12	2741777	2745309	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	DBB	Gma12g00330		zf-B_box	6.5e-06	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma12g00330	12	2741777	2745309	Gma12g00330	12	2741777	2745309	ECH
	Gma11g01013	11	8607770	8609771	Gma12g00330	12	2741777	2745309	ECH
	Gma04g00085	04	751498	753238	Gma12g00330	12	2741777	2745309	ECH
	Gma06g00080	06	721842	723021	Gma12g00330	12	2741777	2745309	ECH
	Gma14g02110	14	52235560	52237258	Gma12g00330	12	2741777	2745309	ECH
	Gma17g02437	17	42361363	42363212	Gma12g00330	12	2741777	2745309	ECH
	Gma12g00330	12	2741777	2745309	Gma11g01013	11	8607770	8609771	GST