Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00114 ATGTCTCCACAAACGCCAACTATCCCACTTTTCATTGTCCTCGCTTCATTAGTCTTATGTAATGGCTATTACTTAGAGGAATCATTTTATAAAACAAATGCTAAACACTACCCTGTGCATGATGGGAGATTGATCAAGACAAAACACGAGCATTTTGGTCTAATAACAAGGGCTAATAGAGCTAGCCATCTTACTTCTAGGCCTCGTGGAACAGTTAGTGTTGATGACTTTGGAGCCAAAGCAGATGGAAGTGATGACAGCGAGGCATTTGGGAAGGCATGGAATGAAGCATGTTCTAGAGGGGCTATCCTTGTGGTACCTGAAAATAGGATCTATCGTCTTAAGCCAATAATATTTTCTGGTCCATGTCGACCCAACACTGCCTTTATGCTCTATGGAACAATCGAGGCATGGTCTCAAATGTCGGCATACCAAGAAGATAGACAACATTGGATTGTGTTTGATAGTGTTTCAAATTTCAGAGTTGGTGGTGGTGGCACATTCAATGGCAAAGGGAAAAAGTGGTGGCAAAGCTCCTGCAAAGTCAACACTAACCTTCCATGCAACGACGGACCAAGACCAAAAGCCGTGACTTTCTATCAATGCAACAATTTGAAAGTGACAGACCTGAGGTTTAAAGATGCACCGCAAATGCATGTGGTCTTTGAAGGATGCTTCAATGTTATTGTTTCGAATCTCGTCATCAGAGCACCAGGTGACAGCCCCAACACTGATGGAATTCATGTCGCAGACACACAAAATATTGTCATAAGCAACAGTGACATTGGGACAGGTGATGATTGTATTTCAATAATAAGCGGGTCCCAAAACGTACGAGCCACAGATATTACCTGCGGACCTGGACATGGAATAAGCATTGGAAGCTTGGGAGCAGATAACTCGGAAGCTGAAGTCTCTAATGTGGTAGTGAACAGAGCAACCTTAACAGGAACGACTAATGGAGTGAGAATAAAGACTTGGCAGGGAGGTTCTGGTTATGCAAGGAACATTAAATTTTTGAACATAGCGATGCAAAATGTGACAAATCCCATAATCATAGATCAATACTACTGTGATCAATCGAAGCCATGCCAAGAGCAGGACTCAGCTGTGCAATTAAGCAATGTGTTGTACCAAAACATAAAAGGAACAAGTGCCTCAGAAGTGGCTATCAAATTTGACTGCAGCCGAGCCGTCCCTTGCAGACAAATTTACGTTCAGGATGTGATTTTAGAACCCCAAGGCCATGGTGGCACCATTGCTACATGTGAACATGTTAGTTATGTCAACAGAGGAAAGTTTTTTCCTCAATGCACTCCATGA 1323 0.4271 MSPQTPTIPLFIVLASLVLCNGYYLEESFYKTNAKHYPVHDGRLIKTKHEHFGLITRANRASHLTSRPRGTVSVDDFGAKADGSDDSEAFGKAWNEACSRGAILVVPENRIYRLKPIIFSGPCRPNTAFMLYGTIEAWSQMSAYQEDRQHWIVFDSVSNFRVGGGGTFNGKGKKWWQSSCKVNTNLPCNDGPRPKAVTFYQCNNLKVTDLRFKDAPQMHVVFEGCFNVIVSNLVIRAPGDSPNTDGIHVADTQNIVISNSDIGTGDDCISIISGSQNVRATDITCGPGHGISIGSLGADNSEAEVSNVVVNRATLTGTTNGVRIKTWQGGSGYARNIKFLNIAMQNVTNPIIIDQYYCDQSKPCQEQDSAVQLSNVLYQNIKGTSASEVAIKFDCSRAVPCRQIYVQDVILEPQGHGGTIATCEHVSYVNRGKFFPQCTP 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00114 440 SUPERFAMILY Pectin lyase-like 63 439 IPR011050 -
Gma12g00114 440 PANTHER POLYGALACTURONASE 6 439 - -
Gma12g00114 440 SMART pbh1 334 355 IPR006626 -
Gma12g00114 440 SMART pbh1 252 273 IPR006626 -
Gma12g00114 440 SMART pbh1 225 251 IPR006626 -
Gma12g00114 440 SMART pbh1 305 326 IPR006626 -
Gma12g00114 440 Pfam Glycosyl hydrolases family 28 104 427 IPR000743 GO:0004650|GO:0005975
Gma12g00114 440 Gene3D - 56 435 IPR012334 -
Gma12g00114 440 ProSitePatterns Polygalacturonase active site. 282 295 IPR000743 GO:0004650|GO:0005975
Gma12g00114 440 PANTHER - 6 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00114 Gma-Chr12 901480 904653 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00114 12 901480 904653 Gma15g02616 15 54490559 54495189 PCT