Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02261 ATGGCTCCTACCTCAGATATCAATCATCTTTCTCATCCTTGTATATACGGGGACTTTGTTTCTTCATACACAGAGAGAAAGTCTGGTTTTATGAAATGGTTTGGTAAGATTTTCAACATTGGATCCAGTAGAGGAAGGGGTGGTGGTCGTCATCTGCAGCAGCCTGTTGAGGAAAACATGGTTTGGCCTGCTCCTGCTAGATCCTTGGATGACCGTGCTAGATCTCGGAAGGAGGAAGAGGATCTAGATCACGCAATTGCACTTTCTTTAGGCGAAAATTTTAAGAGACCAACTGGATATAGATGGCGAACAGGAACTGATGAAGATTATGCAAAGGCTCTTCAGGATCGCAGGTTCTCATCTGCACATCCTCCATATGCCCCTGTACCTTTTTATCCCCGGGGATATGGTGTGCCATTGCATAACAGAACATGTGGAGGGTGCAACCAAGAGATACTCTATGGCAATTGTTTAGGAGTTGGCCATAGTTATTTTCATCCAGACTGCTTTCGGTGTCACTCTTGTCGTTACCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTAAGGAATTGACACACCCTAAATGTGAAGTTTGCCATCAATATATACCAATAAATGCTGCTGGTTTGATTGAATATAGATGCCACCCCTATTGGAACCAAAAGTATTGCCCATCTCATGAATATGATAATACAGCTCGGTGCTGTAGTTGTGAAAGATTAGAGTCGCGGGGTGAAAGATACTATAGATTGGAAGATGGAAGGATTTTGTGTTTTGAGTGCATGGAATCTGCTATAACAGACACTGGTGAATGTCAACCCCTTTATCATTCCATCAGAGACTATTATGAAGGAATGAACATGAAAATTGATCAACAAGTACCAATGCTTCTCGTTGGGAGAGAAGCACTTAATGAAGCCATTGTTGGGGAGAAGAATGGCTTCCATCACTTACCAGAAACAAGGGGCTTATGCCTTTCAGAAGAGCAAACTGTCACAAGTGTATATAGATGGCCAAGAATTGGAGGCCATCGATTAATAAGCATGAGATCTCAAGCTCAAAGGCTGCCTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGTCTTCCAAGGTTACTCACAGGTGCTATACTTGCACATGAGTTGATGCATGCTTGGTTACGCCTCAAAGGTTACCAAAACCTTAGTCTTGAAGTAGAGGAAGGTATTTGTCAAGTTCTTTCTTACATGTGGCTTGATGCAGAAGTCATGTCATGTGCTAGAACCACGCCCTCAACATCATCATCAGCTTCTTCCTCCTCTTACTCTAACTCATCAAAGAAAGGTGTGAAATCTCTTGTTGAAAATAAATTGGGTGAGTTTTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGATTCAGAGCAGCCAATCAAGCTGTGAATAAATATGGTTTACGTTGCACTTTGGAGCATATTCGTTTGACTGGTGGCGTTGGGTGGTGGCATTTGGGTGCGGCGATGGTGTTGGGCGGAGGTTTTGGGGAGAGACAATTAAGGCTTTTGCTTGGAAGATGA 1602 0.4288 MAPTSDINHLSHPCIYGDFVSSYTERKSGFMKWFGKIFNIGSSRGRGGGRHLQQPVEENMVWPAPARSLDDRARSRKEEEDLDHAIALSLGENFKRPTGYRWRTGTDEDYAKALQDRRFSSAHPPYAPVPFYPRGYGVPLHNRTCGGCNQEILYGNCLGVGHSYFHPDCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCHQYIPINAAGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRGERYYRLEDGRILCFECMESAITDTGECQPLYHSIRDYYEGMNMKIDQQVPMLLVGREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSVYRWPRIGGHRLISMRSQAQRLPRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYQNLSLEVEEGICQVLSYMWLDAEVMSCARTTPSTSSSASSSSYSNSSKKGVKSLVENKLGEFFMNQIANDSSPAYGGGFRAANQAVNKYGLRCTLEHIRLTGGVGWWHLGAAMVLGGGFGERQLRLLLGR 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02261 533 ProSiteProfiles LIM domain profile. 143 203 IPR001781 -
Gma11g02261 533 ProSitePatterns LIM zinc-binding domain signature. 145 179 IPR001781 -
Gma11g02261 533 CDD LIM_DA1 145 197 - -
Gma11g02261 533 Pfam LIM domain 145 198 IPR001781 -
Gma11g02261 533 SMART lim_4 144 196 IPR001781 -
Gma11g02261 533 Gene3D Cysteine Rich Protein 141 202 - -
Gma11g02261 533 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 236 - -
Gma11g02261 533 PANTHER PROTEIN DA1-RELATED 2 20 506 IPR045218 -
Gma11g02261 533 Pfam Protein DA1 294 504 IPR022087 -
Gma11g02261 533 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02261 Gma-Chr11 37927950 37933164 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma11g02261 DA1-like 7.5e-96 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g02261 11 37927950 37933164 Gma11g02261 11 37927950 37933164 ECH
Gma18g00321 18 2653739 2658613 Gma11g02261 11 37927950 37933164 GST
Gma11g02261 11 37927950 37933164 Gma14g02114 14 52258396 52269960 PCT
Gma11g02261 11 37927950 37933164 Gma02g02377 02 49838914 49843576 PCT
Gma14g02114 14 52258396 52269960 Gma11g02261 11 37927950 37933164 PCT
Gma02g02377 02 49838914 49843576 Gma11g02261 11 37927950 37933164 PCT