Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02171 ATGAAACAACACTTTGATCTTGAAGTGGTGGCCTCAGAAGAATATGAATCTGAAGTTAGCAGCCTGGTTACTTCCAATATATCAATTCAAGAAACCTATGCAGGTCCTTGCAGTGACAACCTCACCAAATTTTTCAATGTCACAAATCCAATAGAACTTCATCTCCATTCAGATTCTATCTCCCTTGACTTAACTCTAAAGTTCAACAACAATGACTTGGTGGTTAGAAATTCAGCAGGAATCTCCTTCTCAAGCACTAGTGAGAGCAGCATTAATGATCCTCCCTCTCAAACTAATCCAGCGAACAATCCGCGAGTCTTCTCTTGCAATTACTGCAAGCGAAAGTTTTTCAGCTCGCAGGCTCTTGGAGGACACCAAAATGCGCACAAGAGAGAAAGAACAATTGCAAAGAGAGCAATGCGAATGGGGATCTTCTCTGAGAGATATGAAAGTCTAGCATCTCTCCCCTTTAATGGTTCTTTCAGGTCCTTAGGGATAAAGGCACACTCTTCTCTGCACCATGGTTTTGTGCCAACAACGAAAAGCAGTGCAAGATTTGAGCAAGGATATGTTGGTCTTCCAATATTCTTGGAGGAGGATGAGGAAGAACTCTTGTGGCAAGGTAGTTACCATCAGGTTCCCTCTGAGGGAGGCCATACTCATCAGAATTTCTCACTGAGTGGAAGTTCAATTTTGAGTTTCGTTGGGGAGAACGCGAATCATCCACCTGAGTTGACATTGAAACTTTGA 750 0.4267 MKQHFDLEVVASEEYESEVSSLVTSNISIQETYAGPCSDNLTKFFNVTNPIELHLHSDSISLDLTLKFNNNDLVVRNSAGISFSSTSESSINDPPSQTNPANNPRVFSCNYCKRKFFSSQALGGHQNAHKRERTIAKRAMRMGIFSERYESLASLPFNGSFRSLGIKAHSSLHHGFVPTTKSSARFEQGYVGLPIFLEEDEEELLWQGSYHQVPSEGGHTHQNFSLSGSSILSFVGENANHPPELTLKL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02171 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Gma11g02171 249 PANTHER ZINC FINGER PROTEIN JAGGED 1 249 IPR045320 GO:0003700
Gma11g02171 249 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Gma11g02171 249 SUPERFAMILY beta-beta-alpha zinc fingers 104 134 IPR036236 -
Gma11g02171 249 Gene3D Classic Zinc Finger 86 154 - -
Gma11g02171 249 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02171 Gma-Chr11 36797590 36798339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02171 70 249 C2H2 Transcription Factor Family AT1G24625 41.237 4.88e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma11g02171 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00399 18 3615625 3618839 Gma11g02171 11 36797590 36798339 GST
Gma11g02171 11 36797590 36798339 Gma14g02067 14 51792704 51793477 PCT
Gma11g02171 11 36797590 36798339 Gma02g02294 02 49006459 49008655 PCT
Gma14g02067 14 51792704 51793477 Gma11g02171 11 36797590 36798339 PCT
Gma02g02294 02 49006459 49008655 Gma11g02171 11 36797590 36798339 PCT