Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01013 ATGCGAACCCTTTGCGACGTATGCGAGAGCGCCGCTGCCATTCTCTTCTGCGCCGCTGATGAGGCCGCTCTCTGCTCCGCTTGTGACCACAAGATCCATATGTGTAACAAACTTGCTAGTAGGCATGTTCGAGTTGGCCTTGCTGACCCCACTGATGTTCCACGCTGTGACATATGTGAAAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGTAGTTCGCTGTGTCTGCAATGTGATATGATTGTGCATGTTGGTGGTAAAAGAACCCATGGAAGATATCTTCTATTGAGGCAAAGAGCTCAGTTTCCAGGTGATAAACCTGCCCAAATGGAAGAACTAGAGCTGCAACCTATGGATCAAAATGAATCGAGAAGGGATGAAAGTCAGTCACTCAAGCTAAAAACAAGAGATAGTCAGCAGAATCACAGTGTCTCACCTTTTCCAAGGCAAGAAAATAATATTGATGGTCATGGAAAAATGGATAAAAAGTTAATTGATCTTAATACCAGGCCACTGCGGTTAAATGGATCAGCACCAAACAACCAGGAACAATGCATGGATATTTTAAGAGGCAATAATCATGAATCTGCCAGTGTGCCACCAGTAGAATCCTTCAAACAAGAGTCTGAGAAGTAA 639 0.4382 MRTLCDVCESAAAILFCAADEAALCSACDHKIHMCNKLASRHVRVGLADPTDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHGRYLLLRQRAQFPGDKPAQMEELELQPMDQNESRRDESQSLKLKTRDSQQNHSVSPFPRQENNIDGHGKMDKKLIDLNTRPLRLNGSAPNNQEQCMDILRGNNHESASVPPVESFKQESEK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01013 212 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gma11g01013 212 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Gma11g01013 212 MobiDBLite consensus disorder prediction 115 160 - -
Gma11g01013 212 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Gma11g01013 212 Pfam B-box zinc finger 53 90 IPR000315 GO:0008270
Gma11g01013 212 SMART bboxneu5 51 96 IPR000315 GO:0008270
Gma11g01013 212 SMART bboxneu5 1 47 IPR000315 GO:0008270
Gma11g01013 212 MobiDBLite consensus disorder prediction 135 151 - -
Gma11g01013 212 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 212 - -
Gma11g01013 212 Gene3D Classic Zinc Finger 2 92 - -
Gma11g01013 212 CDD Bbox1_BBX-like 4 47 - -
Gma11g01013 212 MobiDBLite consensus disorder prediction 191 212 - -
Gma11g01013 212 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 212 - -
Gma11g01013 212 MobiDBLite consensus disorder prediction 118 134 - -
Gma11g01013 212 CDD Bbox1_BBX-like 56 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01013 Gma-Chr11 8607770 8609771 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gma11g01013 zf-B_box 7.2e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01013 11 8607770 8609771 Gma11g01013 11 8607770 8609771 ECH
Gma11g01013 11 8607770 8609771 Gma12g00330 12 2741777 2745309 ECH
Gma04g00085 04 751498 753238 Gma11g01013 11 8607770 8609771 ECH
Gma06g00080 06 721842 723021 Gma11g01013 11 8607770 8609771 ECH
Gma14g02110 14 52235560 52237258 Gma11g01013 11 8607770 8609771 ECH
Gma17g02437 17 42361363 42363212 Gma11g01013 11 8607770 8609771 ECH
Gma12g00330 12 2741777 2745309 Gma11g01013 11 8607770 8609771 GST