Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01700 ATGCAGAATTCGCAGCAAGAATGCAAGAAAAAGGAGATGGTGGTGAAACCAATAGAAGATATAGTGGTGACAAATACTACATGTACAAAGGCTGCAGTAGGTTCTGTAGAAAGGAAGCCAAGGCCACAGAAAGAACAAGCTATTAATTGTCCAAGGTGTCATTCAATTAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAGCCTAGGTATTTCTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGGACCCTCAGGAACATCCCTGTAGGAGGTGGCTCTAGGAAGAACAAGAGATCTTCAGCTTCTTGTAGTAACAATAGTCATCACAATGACAATAATTCAACCAATAAGAAGCTTTCTGCAGATCTGGTCATCACACCTCCAACTTTGTCACACACTACTCAAAACCCTAAGAGCAATGATAATAGTATTATTCATCAAGGCCAAGATTTCAATTTGGCTTTCCCATCCACCACCACCACCACCTCAGATTTCAGAAAAATCTCTGAATTGGTCCAACAAAATAACAACAACAATAGTAGCAACAACAGCATGTCAGCTTCTTCTTCAACCACAACTACAACTACTTCCACTTCTCATCACCTTTCTGCATTAGAGCTTCTTACTGGGATCACTTCTAGTTCCAGTACTGGTTTGAGTACTTCTTTCATGCCTATTCCAGTTCCATCTAATCCAAATTCTATCTACACTTGTGGATTTCCTCTGCAAGATTTCAAGCCAGGAACCTTGAATTTCTCTTTAGATGGGATTGGAAAGGGGTACACAAGCCTTCAGAATGTTCATGGTGGGAGGCTCTTGTTTCCATTTGAGGACCTAAAACAGGTTTCTAGCACCACCACAATGAATCAGACGCAACAAGGGGATTCAACTGGGTATTGGACTGGAATGTTAGGCGGAGGATCATGA 939 0.4175 MQNSQQECKKKEMVVKPIEDIVVTNTTCTKAAVGSVERKPRPQKEQAINCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRSSASCSNNSHHNDNNSTNKKLSADLVITPPTLSHTTQNPKSNDNSIIHQGQDFNLAFPSTTTTTSDFRKISELVQQNNNNNSSNNSMSASSSTTTTTTSTSHHLSALELLTGITSSSSTGLSTSFMPIPVPSNPNSIYTCGFPLQDFKPGTLNFSLDGIGKGYTSLQNVHGGRLLFPFEDLKQVSSTTTMNQTQQGDSTGYWTGMLGGGS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01700 312 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Gma10g01700 312 MobiDBLite consensus disorder prediction 89 123 - -
Gma10g01700 312 MobiDBLite consensus disorder prediction 293 312 - -
Gma10g01700 312 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 309 IPR045174 GO:0003700|GO:0006355
Gma10g01700 312 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 25 309 - -
Gma10g01700 312 MobiDBLite consensus disorder prediction 178 202 - -
Gma10g01700 312 Pfam Dof domain, zinc finger 46 102 IPR003851 GO:0003677|GO:0006355
Gma10g01700 312 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
Gma10g01700 312 MobiDBLite consensus disorder prediction 97 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01700 Gma-Chr10 44147950 44150870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g01700 11 312 C2C2-Dof Transcription Factor Family AT4G24060 41.261 5.39e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma10g01700 zf-Dof 3.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01700 - - gmx:778112 549.666