LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma09g00307	ATGGCGGAGGAGAAAAGACAAGAGCAAGTAGCGAACCCCAACAACTCATCATCCACCACCATGCCATTTTCCGATCAGATTCCCAACAACAACAACTCCATCATGATGACTTTCCCTTTCCAACAACCATCCACCATCTTCGACCTCATGATGATGCCTTCTTCTTCTTCCTTCATGGACCTGCTCGCCGTGCAGGACTACAACGTGCCGTTATTCGATTGGCTCCCCGCCGGTGTCGCACACCATCCTTCGCCGTCTCCGGCCAGCTCCAACGTCCCCGACTCCTCCGAGGTGCTCAACACGCCGGCGTCGCCTAATTTTTCGTCGATTTCCTCGTCGTCGAATGAGGCTACGGTCAATAACAACTCCGAACAACAGAGTGGGAAAGAATTACAAGAAGAAGAAGGTGGTAATGGAGGCAGAGGAGATAACCAAGATCAAGACAAGACTAAGAAACAGCTAAAAGCGAAGAAGAAGAAGAAGAAGAAGAACCAAAAGAAGCAAAGAGAACCAAGATTCGCGTTCATGACAAAGAGCGAGGTTGATCACCTAGACGATGGTTATAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCAAGGAGCTACTACCGTTGCACCAGCGCGGGTTGCGGCGTTAAGAAGCGCGTGGAGCGGTCCTCCGAAGACCCTTCCATGGTGGTGACAACCTACGAGGGTCAGCACACGCACCCGTGCCCTGCTTCGGCTCGGTCTAGCCTTGGCTTCGTGACCCAACCTGCTGCGTTCGGTCCCTCACACTTTATGCTGCCACATCAAGCACAAGCTTCGGCTTTGAGTGTTGTTAGCTCCAGTAGTAACTACATCAATACGACATCGTTTGGTGGGTTTGTTCAGGATCACTCGACCCGTCGTGGTTTTGGACATGAGGCTTTGTTGAGGGACAATGGGCTGCTTCAGGACATTATTGTCCCAACTCAGGTGACCAAGGAGGAGATGGATTGA	996	0.5141	MAEEKRQEQVANPNNSSSTTMPFSDQIPNNNNSIMMTFPFQQPSTIFDLMMMPSSSSFMDLLAVQDYNVPLFDWLPAGVAHHPSPSPASSNVPDSSEVLNTPASPNFSSISSSSNEATVNNNSEQQSGKELQEEEGGNGGRGDNQDQDKTKKQLKAKKKKKKKNQKKQREPRFAFMTKSEVDHLDDGYKWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSEDPSMVVTTYEGQHTHPCPASARSSLGFVTQPAAFGPSHFMLPHQAQASALSVVSSSSNYINTTSFGGFVQDHSTRRGFGHEALLRDNGLLQDIIVPTQVTKEEMD	331

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma09g00307	331	Pfam	WRKY DNA -binding domain	185	242	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gma09g00307	331	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	53	320	IPR044810	GO:0003700
	Gma09g00307	331	MobiDBLite	consensus disorder prediction	1	30	-	-
	Gma09g00307	331	MobiDBLite	consensus disorder prediction	84	127	-	-
	Gma09g00307	331	Gene3D	WRKY domain	169	245	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gma09g00307	331	MobiDBLite	consensus disorder prediction	128	152	-	-
	Gma09g00307	331	MobiDBLite	consensus disorder prediction	153	168	-	-
	Gma09g00307	331	Coils	Coil	144	164	-	-
	Gma09g00307	331	MobiDBLite	consensus disorder prediction	8	30	-	-
	Gma09g00307	331	SUPERFAMILY	WRKY DNA-binding domain	176	244	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gma09g00307	331	ProSiteProfiles	WRKY domain profile.	179	244	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gma09g00307	331	PANTHER	WRKY TRANSCRIPTION FACTOR 48-RELATED	53	320	-	-
	Gma09g00307	331	MobiDBLite	consensus disorder prediction	81	173	-	-
	Gma09g00307	331	SMART	WRKY_cls	184	243	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma09g00307	Gma-Chr9	2892701	2894263	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma09g00307	150	329	WRKY Transcription Factor Family	AT2G47260	50.490	3.57e-53	176

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gma09g00307		WRKY	1.8e-27	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma09g00307	09	2892701	2894263	Gma09g00307	09	2892701	2894263	ECH
	Gma15g01294	15	11439022	11441703	Gma09g00307	09	2892701	2894263	GST
	Gma09g00307	09	2892701	2894263	Gma17g00330	17	2640244	2642569	PCT