Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02171 ATGGCAAGAGCAGCTTGCAATCACCTTCACTTGGTTCCCAGTTTAGTTCATCCTCTAAAGTCAACCCTCTTCACAAATCACACTCTTTCCACCACACGCACTCGCTTCTATGGCATTCACCGAAGGTTCTCTTCTTCTTCATCCAAAATAAGCATGAGCCTCAAGGCTGGTATTGTTGGCCTTCCCAACGTTGGCAAGTCCACTCTCTTCAATGCCGTTGTGGAAAATGGAAAGGCTCAAGCTGCTAATTTTCCATTTTGTACAATAGAGCCAAATGTAGGGATTGTTGCTGTTCCAGATTCTCGTCTTCACGTGCTTTCTGATCTCAGCAAATCTCAACGAGCAGTTCCAGCATCAATAGAGTTTGTAGATATTGCTGGGCTTGTCAAGGGTGCAAGTCAAGGAGAGGGTTTGGGCAATAAGTTTTTGTCTCATATTCGTGAGGTGGACTCTATACTTCAGGTTGTACGATGTTTTGAAGACAACGACATTGTTCATGTGAATGGGAAAGTTGATCCCAAGTCTGATATTGATGTTATCAATTTGGAGCTTGTTTTCTCAGATTTGGACCAGATTGAAAAAAGAATTGATAAGCTAAAGAAAGGCAAGGCAAAGGATTCACAAAAACTCAAGGAAGAGGCAGAAAAGTCTGCACTGGAAAAGATTCGTGAGGCGCTTATGGATGGAAAACCTGCGCGATCTGTTACCTTAACTGATTTTGAAAGGGATGCTGTAAAGCATCTCTGCTTGCTCACCATGAAACCTGTTATATATGTGGCAAATGTTGCAGAATCTGATCTAGCTGATCCTGCAAACAATAATTATGTCAAGGACGTAACAAATGTTGTGTCTGAGTTGCAGTCCAGAATTGTAACAATTTCAGCACAGGTTGAGGCAGAGCTTACTGAACTACCAGTTGAAGAACGACAAGAATATTTGCAATCTCTTGGTGTTAGTGAAAGTGGTCTTGGCAACCTAATAAGGGCAACATATGACCTTCTGGGTCTCAGAACTTACTTTACTTCTGGTGAGAAGGAGACAAAGGCATGGACAATACTTGCAGGAATGACTGCACCTCAAGCAGCTGGAGTTATTCACTCTGACTTTGAGAAGGGTTTCATTCGAGCAGAGACAGTGTCTTATGAGGATTTTGTTGCTGCTGGTTCACTTTCTGCAGCACGAGAGAAAGGACTGTTGAGATCTGAAGGTAAAGACTACGTTGTACAAGAAGCAGATGTCATGTTGTTTCGATTCAATGTTTAG 1263 0.4236 MARAACNHLHLVPSLVHPLKSTLFTNHTLSTTRTRFYGIHRRFSSSSSKISMSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLHVLSDLSKSQRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDIDVINLELVFSDLDQIEKRIDKLKKGKAKDSQKLKEEAEKSALEKIREALMDGKPARSVTLTDFERDAVKHLCLLTMKPVIYVANVAESDLADPANNNYVKDVTNVVSELQSRIVTISAQVEAELTELPVEERQEYLQSLGVSESGLGNLIRATYDLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVSYEDFVAAGSLSAAREKGLLRSEGKDYVVQEADVMLFRFNV 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02171 420 TIGRFAM TIGR00092: GTP-binding protein YchF 52 420 IPR004396 GO:0005524|GO:0005525|GO:0016887
Gma08g02171 420 PRINTS GTP1/OBG GTP-binding protein family signature 56 76 IPR006073 GO:0005525
Gma08g02171 420 PRINTS GTP1/OBG GTP-binding protein family signature 78 96 IPR006073 GO:0005525
Gma08g02171 420 PRINTS GTP1/OBG GTP-binding protein family signature 122 137 IPR006073 GO:0005525
Gma08g02171 420 PRINTS GTP1/OBG GTP-binding protein family signature 139 157 IPR006073 GO:0005525
Gma08g02171 420 PANTHER OBG-LIKE ATPASE 1 52 420 - -
Gma08g02171 420 CDD YchF 56 334 IPR041706 -
Gma08g02171 420 Hamap Ribosome-binding ATPase YchF [ychF]. 53 420 IPR004396 GO:0005524|GO:0005525|GO:0016887
Gma08g02171 420 Gene3D - 100 419 IPR012675 -
Gma08g02171 420 PANTHER OBG GTPASE FAMILY 52 420 - -
Gma08g02171 420 CDD TGS_YchF_OLA1 334 418 IPR013029 -
Gma08g02171 420 Pfam 50S ribosome-binding GTPase 56 168 IPR006073 GO:0005525
Gma08g02171 420 Coils Coil 189 209 - -
Gma08g02171 420 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 54 335 IPR031167 GO:0005525
Gma08g02171 420 SUPERFAMILY TGS-like 336 417 IPR012676 -
Gma08g02171 420 Gene3D - 165 254 IPR023192 -
Gma08g02171 420 Gene3D - 54 335 IPR027417 -
Gma08g02171 420 Pfam Protein of unknown function (DUF933) 336 419 IPR013029 -
Gma08g02171 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 358 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02171 Gma-Chr8 20404211 20423578 Transposed