Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02106 ATGCGCAATTCAAAGTTGTGTGCAGCGTCTCTTCTTATAGCACGGGCCAAGTCCCTCCAACTTCACCACCGCCACGTGCGTCACTGCTTCCCTCCATTTTCTTCTTCTTCTGCAACCTCAATCTCACTCTTCAGGTTTCATCACCCTTGGCTCTCTTCCTTGTGCAACGCGAAATCACTCATCACCACGCGCCTCTTCTCCAGCTACTACTCCCTCGAACAGTTCTCCGATGACGAATACGACTGCGACTTCGAGAATCAACAGGCATCGTCTACAGTGGCTAATGTGGATGAGTGGAAATGGAAACTCAGCATGTTGTTACGCAGTGAAAAGGATCAGGAGATTGTATCTAGAGACAGAAAAGATAGGAGGGACTATGAACAGATAGCTAACCTTGCCAAAAGAATGGGGCTTTACAGTGAGTTGTTTGGAAAAGTGGTTGTTGCAAGCAAGGTGCCTCTTCCTAACTACCGTCCAGATTTGGATGACAAACGTCCACAAAGAGAGGTGGTGATTCCACTAAGCTTGCAAAGGAGGGTTGAGGGTTTGTTGCAGGAATACCTTGATAGGCTTCAGTTGAATTCTGCAAAGACAACTGACAGCCTAGATGATGTGAATTCCACCAATCAAGTTAAAGATATAAACATGGATGAAAATGCTGATTCTTTTGTGGATGAATCTGTTATGGAAAAGGTTCTCCAGAAGAGGAGTTTGAGGATGCGTAATATGCAAAGAGCTTGGCAGGAATCACCCGAGGGCAGGAAGTTGCTGGAATTCCGGAAGTCTCTACCATCATTCAAGGAGAAGCAAGGTTTACTTCAAGCTATAGCACATAATCAGGTGATAGTTATATCTGGAGAGACTGGCTGTGGTAAAACCACTCAACTTCCTCACTATGTATTAGAATCAGAGGTTGAGTCTGGTCGTGGAGCATTTTGTAGCATTATTTGCACACAGCCTCGAAGGATCTCTGCTATGGCAGTGGCAGAGAGAGTGTCAGCTGAGCGAGGAGAGCCTCTTGGTGAAACAGTTGGCTTCAAAGTTCGATTAGAAGGAATGAAAGGAAAAAACACCCATCTGCTATTTTGTACCAGTGGTATATTACTTAGAAGGCTGTTGAGTGATCGAAACCTGAATGGTATAACCCATGTTTTTGTGGATGAAATTCATGAAAGAGGCATGAATGAAGACTTCTTACTGATTGTGTTAAAGGATCTGCTTCCACGTCGTCGGGATTTAAGATTGGTTTTAATGAGTGCCACCTTGAATGCTGAGCTTTTTTCGAATTATTTTGGAGGTGCTCCTACATTTCATATTCCGGGTTTCACTTATCCAGTTAGAGCACACTTTTTAGAAGATATTTTGGAAATGACGGGATATAAATTGACTTCCTTCAACCAAATTGATGATTACGGTCAAGAGAAACTGTGGAAGACACAAAAGCAACTAGCACCACGGAAGAGGAAAAACCAGATCACTGCTCTTGTTGAGGACGCTCTTTCTAATTCAAGCTTTGAGAACTATAGCTCCAGGGCACGTGATTCACTAACATCTTGGGCACCTGACTGCATTGGTTTTAATCTCATTGAGGCTGTTCTATGCCATATATGTCGGAAGGAACGACCAGGTGCTGTCTTAGTATTTATGACTGGGTGGGAGGATATAAGCTCTTTAAAAGATCAGCTTAAAGCACATCCTCTTGTAGGAGATCCCAATAGGGTTCTGCTTCTAACATGTCATGGTTCAATGGCAACTTCAGAACAGAAACTCATATTTGAGAAACCACCTCCAAATATAAGGAAAGTGATACTTGCTACAAATATGGCTGAGGCAAGTATTACAATCAATGACATAGTTTTTGTGGTTGATTGTGGAAAAGCAAAAGAGACCACTTATGATGCTTTAAATAACACGCCATGTCTTCTACCTTCTTGGATATCACAAGCATCTGCACGTCAGGCAAGTATCTTTAGAAGAGGTAGGGCTGGTCGTGTGCAGCCAGGAGAATGTTACCACCTTTACCCCAAATGTGTTTATGATGCCTTTTCTGAATATCAACTTCCTGAACTACTGAGAACACCTTTGAATTCTCTATGCTTGCAAATAAAAAGTTTGCAGGTTGAGAGCATAGGAGGGTTCTTATCAGCAGCTTTACAGGCACCAGAGCCACGGGCTGTTCAAAATGCTATTGATTTTCTCAAGATGATTGGAGCATTAGATGAACAAGAAAATCTTACGAATCTTGGGAAGTTTCTCTCTATGCTTCCTGTTGATCCCAAGCTTGGAAAAATGTTAATAATGGGAGCTATATTTCGATGCTTTGATCCTGTTCTTACAATAGTTGCTGGCCTTAGTGTCAGGGATCCTTTTCTTTTGCCCCAAGACAAGAGGGATTTAGCAGGGACAGCGAAGTCTAGGTTTTCTGCTAAAGATTACAGTGATCATATGGCTCTTGTTCGAGCATATGAAGGATGGAAAGATGCAGAAAGAGAAGGGTCGGCTTACGAGTACTGCTGGAGGAATTTTCTATCAGCCCAAACTCTTCAGGCTATTCATTCACTTCGGAAACAGTTTAGCTTTATCTTGAAAGAAGCTGGCTTGGTAGATGCAGAAGCTAACGTCATTAACAAATTGAGTCACAATCAATCTCTTGTGCGTGCAGTCATATGTTCTGGGCTCTTTCCTGGCATAGCATCAGTGGTGCACAGGGAGACATCCATGTCATTTAAAACAATGGATGATGGCCAGGTTTTATTGTATGCTAATTCAGTGAATGCACGTTACCAGACCATTCCTTACCCTTGGTTGGTTTTTGGTGAGAAAGTCAAGGTCAATGCTGTTTTTATCCGTGATTCCACTGGTGTATCTGATTCAATACTTATCCTTTTTGGTGGTGCTCTAAGTAATGGGATACAGGCTGGGCATCTGAAAATGTTAGATGGGTATGTTGACTTCTTCATGGATCCTAATTTAGCTGACAGCTTTTTGAAGCTTAAGGAAGAGCTCAATAAGCTTATCCAAAAGAAGCTGGAAGATCCTAGCATTGACATTCACAAGGAAGGGAAATACTTGATGCTTGCTGTTCAGGAGCTGGTTTCAGGGGATCAATGCGAAGGAAGATTTGTATTTGGCCGTGAAAGCCGGAAGCCTAAGGCCTCCAATGATGAAAACAAATTCACAAAAGATGGAACAAATCCCAAGAGCTTGCTGCAGACTCTGTTGATGCGAGCAGGGCACTCCCCACCCAAATACAAAACGAAACATCTTAAGACAAATGAGTTTAGGGCATTGGTGGAGTTTAAGGGAATGCAATTTGTTGGCAAACCAAAGAGAAACAAGCAACTTGCAGAAAGGGATGCTGCTATAGAGGCATTGGCTTGGTTGACTCACACCTCTGACAATAACCAGCATGAAGATGATAAGTCTCCTCCTGATGTAACTGACAACATGCTAAAACTCCTAGGGAAGCGTAGAAAATCAAAGCGAGGCCATGGTTGA 3498 0.4271 MRNSKLCAASLLIARAKSLQLHHRHVRHCFPPFSSSSATSISLFRFHHPWLSSLCNAKSLITTRLFSSYYSLEQFSDDEYDCDFENQQASSTVANVDEWKWKLSMLLRSEKDQEIVSRDRKDRRDYEQIANLAKRMGLYSELFGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEYLDRLQLNSAKTTDSLDDVNSTNQVKDINMDENADSFVDESVMEKVLQKRSLRMRNMQRAWQESPEGRKLLEFRKSLPSFKEKQGLLQAIAHNQVIVISGETGCGKTTQLPHYVLESEVESGRGAFCSIICTQPRRISAMAVAERVSAERGEPLGETVGFKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSNYFGGAPTFHIPGFTYPVRAHFLEDILEMTGYKLTSFNQIDDYGQEKLWKTQKQLAPRKRKNQITALVEDALSNSSFENYSSRARDSLTSWAPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISSLKDQLKAHPLVGDPNRVLLLTCHGSMATSEQKLIFEKPPPNIRKVILATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQASIFRRGRAGRVQPGECYHLYPKCVYDAFSEYQLPELLRTPLNSLCLQIKSLQVESIGGFLSAALQAPEPRAVQNAIDFLKMIGALDEQENLTNLGKFLSMLPVDPKLGKMLIMGAIFRCFDPVLTIVAGLSVRDPFLLPQDKRDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILKEAGLVDAEANVINKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSNGIQAGHLKMLDGYVDFFMDPNLADSFLKLKEELNKLIQKKLEDPSIDIHKEGKYLMLAVQELVSGDQCEGRFVFGRESRKPKASNDENKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNNQHEDDKSPPDVTDNMLKLLGKRRKSKRGHG 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02106 1165 PANTHER ATP-DEPENDENT RNA HELICASE 72 1059 - -
Gma08g02106 1165 MobiDBLite consensus disorder prediction 1046 1065 - -
Gma08g02106 1165 CDD DEXHc_RHA-like 279 439 - -
Gma08g02106 1165 Pfam Helicase conserved C-terminal domain 531 665 IPR001650 -
Gma08g02106 1165 Pfam Double-stranded RNA binding motif 1066 1128 IPR014720 -
Gma08g02106 1165 MobiDBLite consensus disorder prediction 1133 1154 - -
Gma08g02106 1165 Gene3D - 1045 1133 - -
Gma08g02106 1165 SUPERFAMILY dsRNA-binding domain-like 1059 1140 - -
Gma08g02106 1165 SMART helicmild6 556 666 IPR001650 -
Gma08g02106 1165 SMART DRBM_3 1066 1129 IPR014720 -
Gma08g02106 1165 Pfam DEAD/DEAH box helicase 273 424 IPR011545 GO:0003676|GO:0005524
Gma08g02106 1165 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 72 1059 - -
Gma08g02106 1165 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 834 IPR027417 -
Gma08g02106 1165 Pfam Helicase associated domain (HA2) 729 815 IPR007502 GO:0004386
Gma08g02106 1165 SMART ultradead3 261 454 IPR014001 -
Gma08g02106 1165 SMART ha2_5 728 819 IPR007502 GO:0004386
Gma08g02106 1165 Gene3D - 709 810 - -
Gma08g02106 1165 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 273 440 IPR014001 -
Gma08g02106 1165 CDD SF2_C_RHA 518 674 - -
Gma08g02106 1165 MobiDBLite consensus disorder prediction 1046 1062 - -
Gma08g02106 1165 Gene3D - 211 441 IPR027417 -
Gma08g02106 1165 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 528 706 IPR001650 -
Gma08g02106 1165 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 885 966 IPR011709 -
Gma08g02106 1165 MobiDBLite consensus disorder prediction 1130 1165 - -
Gma08g02106 1165 Gene3D - 525 684 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02106 Gma-Chr8 19051583 19079564 Wgd