Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01802 ATGCAAGACCCAACAATATTCCCAGGAGTGAAGCCACCACCACATTTTCCCGAACAAGAACAACTCCAGTGTCCACGTTGTAACTCCAACAACACCAAATTCTGCTACTACAACAACTACAACCTCTCGCAGCCACGCCACTTTTGCAAGAACTGTAGAAGATACTGGACTAAAGGTGGTGCCTTGAGAAACATCCCTGTTGGGGGTGGAAGCAGAAAGACCACAAAACGTTCTTCATCAACCTCAAAACGCTCTTCTGCACCATCTTCTTCTTCCTCTGCAGTTTCGGAGCCTGACCCGACCCGTAATTGCACCAACCCGGTTGATCAAGACCAAAGGGTGCTCAACATTGGTGGTGGGAGCTTCAGTTCCCTCTTGGCTTCATCTGGGCACTTTGGAACCCTCCTGGAGGGTCTGAATCCAACTGGGTCGAGTCTCAAAATGGGTGAATTTGGGGAGGGTGTGAGTTCTGATCCGGGTTTGAATTTGGTTTCGGGTCAAAACCCGGGTTTGCAGGTGCAGAGTACTAATGGGAGGTCAGAGAGTTTTCTAGGTTTGCAAAATGGTGATTCAAGCTGTTGGAATGGTACCCATGGCTGGTCTGATCTTGCAATATACACACCTGGCCCAAGTTTTCAATAG 642 0.4875 MQDPTIFPGVKPPPHFPEQEQLQCPRCNSNNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKTTKRSSSTSKRSSAPSSSSSAVSEPDPTRNCTNPVDQDQRVLNIGGGSFSSLLASSGHFGTLLEGLNPTGSSLKMGEFGEGVSSDPGLNLVSGQNPGLQVQSTNGRSESFLGLQNGDSSCWNGTHGWSDLAIYTPGPSFQ 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01802 213 MobiDBLite consensus disorder prediction 71 111 - -
Gma08g01802 213 ProSitePatterns Zinc finger Dof-type signature. 24 60 IPR003851 GO:0003677|GO:0006355
Gma08g01802 213 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 10 213 - -
Gma08g01802 213 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 213 IPR045174 GO:0003700|GO:0006355
Gma08g01802 213 MobiDBLite consensus disorder prediction 63 111 - -
Gma08g01802 213 Pfam Dof domain, zinc finger 20 76 IPR003851 GO:0003677|GO:0006355
Gma08g01802 213 ProSiteProfiles Zinc finger Dof-type profile. 22 76 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01802 Gma-Chr8 16070491 16072341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01802 14 136 C2C2-Dof Transcription Factor Family AT1G51700 56.028 4.42e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma08g01802 zf-Dof 7.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01802 - - gmx:121172632 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01802 08 16070491 16072341 Gma08g01802 08 16070491 16072341 ECH
Gma07g00112 07 960692 962401 Gma08g01802 08 16070491 16072341 GST
Gma13g03153 13 45667487 45669492 Gma08g01802 08 16070491 16072341 PCT
Gma08g01802 08 16070491 16072341 Gma13g03153 13 45667487 45669492 PCT