Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00865 ATGTTAGACAACAACAATTGCAGTGCTTCTAATTCTGGTGCACCATCTTCTTCTGATGCCGCCTTTGCATTATCTGAAAATGGGGTGGCTAACAACAAAAGGAAAAGAAGACCCGCAGGCACACCCGATCCAGATGCTGAGGTTGTGTCTCTCTCACCAACCACCTTGCTGGAATCTGACAGATAcgtgtgtgagatctgcaaccaagggttccagagggaccagaatcttcaaatgcacaggaggaggcacaaggtgccatggaagctgctaaagagggaaACAGCACAAGGGGGGCATCAGAAGAAGAGGGTGTTTGTGTGCCCTGAGCCAACTTGTTTGCACCATGACCCTTGCCATGCCCTTGGGGACCTTGTGGGAATCAAGAAGCACTTCAGAAGGAAGCACAGCAATCACAAGCAGTGGGTCTGTGACAAGTGTTCCAAAGGGTATGCTGTTCAATCTGATTACAAGGCTCACATCAAAACCTGTGGCACCAGGGGCCATTCCTGTGACTGTGGCCGTGTCTTTTCCAGGGTGGAGAGTTTCATAGAACACCAAGATGCATGCACTGTCCGGCAGCACCGGCCAGAGTTACAAGCACTTCAACCAGCATGCTCTTCAAGAACAGCTTCAAGCGCAAGTCCCTCTAGTGAGGCAAATTTTAGCATAGCCCCACCATTGCAAGGACTTCCAGTACTGCCAAAACCAGCTGAACAACAACAACAACCAGCAACAACAACAGTCTTATTAACTTCAGAGATACACGGTAACAAGTCCACTACCTCGCATAACTTAGAACTTCAGCTCTTACCCTCCTCAACAAACTCTCAAGCAAAACGAAATACAAAGGAAAACTATGGCTTGAAACTTTCAATAGGCTCATGTAGTAACGACAAAGGGAATAGTAGTGAACCACCAGAGAGAGCATGTTCAGAAGCACATAGGAGCCCACCTGAAAGGAATAATAATAATAATAATAACAATGTGAGTGACTATTCCACGTTGGAAGTGGCAAGGTTGCAGGAGTTTGCAGGAGAGGAACTCAAGTTGGCCATTGCAGAAAAGGCTTATGCAGAAGAGGCTAGAAGAGAGGCCAAACGTCAAATTGAGATAGCTGAACTTGAGTTTGAGAATGCCAAAAGGATAAGGAAACAAGCACAAGCTGAACTTTCAAGGGCTGAAGAGCTGAGAAAGCAAGCCATCAAGAAGATAGGTTCCACTGTTATGGAAATAGCATGTCATACTTGCAAGCAACAGTTTCAGTCTTCAACTGTTGGGGTGCCATCATCAGAAGAAACCTCCATTGTGATGAGTTACATGTCCTCAGCCACCACAGAAGGAGAAGCAGAATGA 1356 0.427 MLDNNNCSASNSGAPSSSDAAFALSENGVANNKRKRRPAGTPDPDAEVVSLSPTTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETAQGGHQKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQHRPELQALQPACSSRTASSASPSSEANFSIAPPLQGLPVLPKPAEQQQQPATTTVLLTSEIHGNKSTTSHNLELQLLPSSTNSQAKRNTKENYGLKLSIGSCSNDKGNSSEPPERACSEAHRSPPERNNNNNNNNVSDYSTLEVARLQEFAGEELKLAIAEKAYAEEARREAKRQIEIAELEFENAKRIRKQAQAELSRAEELRKQAIKKIGSTVMEIACHTCKQQFQSSTVGVPSSEETSIVMSYMSSATTEGEAE 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00865 451 MobiDBLite consensus disorder prediction 1 25 - -
Gma08g00865 451 MobiDBLite consensus disorder prediction 1 48 - -
Gma08g00865 451 Gene3D Classic Zinc Finger 40 109 - -
Gma08g00865 451 Pfam Zinc finger, C2H2 type 62 84 IPR013087 -
Gma08g00865 451 MobiDBLite consensus disorder prediction 259 305 - -
Gma08g00865 451 PANTHER OS03G0310200 PROTEIN 1 451 IPR039288 GO:0009630
Gma08g00865 451 Gene3D Classic Zinc Finger 127 204 - -
Gma08g00865 451 MobiDBLite consensus disorder prediction 203 224 - -
Gma08g00865 451 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Gma08g00865 451 MobiDBLite consensus disorder prediction 203 246 - -
Gma08g00865 451 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Gma08g00865 451 MobiDBLite consensus disorder prediction 259 331 - -
Gma08g00865 451 MobiDBLite consensus disorder prediction 317 331 - -
Gma08g00865 451 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 1 451 - -
Gma08g00865 451 SMART c2h2final6 106 136 IPR013087 -
Gma08g00865 451 SMART c2h2final6 62 84 IPR013087 -
Gma08g00865 451 SMART c2h2final6 142 169 IPR013087 -
Gma08g00865 451 Coils Coil 349 404 - -
Gma08g00865 451 SUPERFAMILY beta-beta-alpha zinc fingers 59 85 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00865 Gma-Chr8 7131205 7134247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00865 1 451 C2H2 Transcription Factor Family AT2G01940 53.291 1.06e-147 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma08g00865 zf-C2H2 0.0043 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00865 08 7131205 7134247 Gma08g00865 08 7131205 7134247 ECH
Gma05g01382 05 35491308 35493714 Gma08g00865 08 7131205 7134247 GST