Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00394 ATGAGAAACTATATGCAGTTTCTTAATCCTCAGATCTTGTGCTTCCTATTTTTCAGTGCTCTATTATTATGTCTAGTTGAAACAAAGTCCACCATTGAACCATGCAATTCCTCAAACTCGTGCCCCTCTCTTCTCTCTTATCTCTTGCCATGGGACTCCAAGCTCTCCGAAATCGCCACTCGCTTCAATGTAAACTTTTTTGATATCTTGGCCTCAAACTCTCTCTTCCCCATAACACCATCAAGTGCACACCAAATCCTTAGTGCCAAATCACAAGTGAAAATACCAATCTCATGTTCTTGTGTGGATGGCATCCGAAGGTCCATGTCAACCATTTACACTGTTCATGCAGCTGATACACTTGCTTCCATATCAGAAGGCTATGGTGGATTGGTTAGTGCTGAACAAATCAAGATTGTGAACGCCATCAATGCCACCAACCCTTTGACATATAGAGGCACCCTTGTTATTCCACTGCCATGCACGTGTTTTGACAATGTGAATAATGGGGGAAATGCTATTTATATGTCATATGTGGTGCAGAGAAGGGAGAGCCTGGGGAGCATAGCAACCAAGTTTGGTACAACTGTTTCGGACTTGGAAACTGTAAATGGCTTTGGGGAAGCTACGGTAGATCCAGGAGACATTCTATCTATTCCCATTGCAGCATGTTCATCAGCAACCTTGAATTGGTACGATGAGAGTATGATAGTCCCAAATGGCTCATATACATTAACTGCCACCAACTGCATCAAATGCACTTGTGAACCAACGGATATCACGTTGCAATGTGTTCCTTCTGGACTAGACGTCCCCTGCTATAATTTACGTTGCAAAGGATCCAATCTTATTATTGGTGATCAATGTGTGGATCTTTCACAAACAGCTTGCAATGTGAGCCAATGTGTTTACCGTGGCCATAGGGGTGGCAAAATTCTGAGTAGTATGAAGAAATCTTCTTACCTCGAGTGCCCGGATAGTTTGTGTCATAGCGGACCATCATGTTGGCCTTCCTCATCACCATATCCTGAAGACCCATTTGGTATGTCTCCAAAGCCATCCCCCTCCTTGCCACTACCAGTTTCTAAGGCTGCTCTGAGGACTCTTGCCTCCAGTGGAAGGCTTGGTCCATTTTTATTCAATGTGCTGCAATTATTCTTGTTAAAATTTATCATTTATTTTCTTATTTGA 1191 0.4282 MRNYMQFLNPQILCFLFFSALLLCLVETKSTIEPCNSSNSCPSLLSYLLPWDSKLSEIATRFNVNFFDILASNSLFPITPSSAHQILSAKSQVKIPISCSCVDGIRRSMSTIYTVHAADTLASISEGYGGLVSAEQIKIVNAINATNPLTYRGTLVIPLPCTCFDNVNNGGNAIYMSYVVQRRESLGSIATKFGTTVSDLETVNGFGEATVDPGDILSIPIAACSSATLNWYDESMIVPNGSYTLTATNCIKCTCEPTDITLQCVPSGLDVPCYNLRCKGSNLIIGDQCVDLSQTACNVSQCVYRGHRGGKILSSMKKSSYLECPDSLCHSGPSCWPSSSPYPEDPFGMSPKPSPSLPLPVSKAALRTLASSGRLGPFLFNVLQLFLLKFIIYFLI 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00394 396 CDD LysM 111 149 IPR018392 -
Gma08g00394 396 SUPERFAMILY LysM domain 176 220 IPR036779 -
Gma08g00394 396 Gene3D LysM domain 169 229 IPR036779 -
Gma08g00394 396 Gene3D LysM domain 105 168 IPR036779 -
Gma08g00394 396 CDD LysM 177 219 IPR018392 -
Gma08g00394 396 Pfam LysM domain 178 220 IPR018392 -
Gma08g00394 396 SMART LysM_2 112 158 IPR018392 -
Gma08g00394 396 SMART LysM_2 177 220 IPR018392 -
Gma08g00394 396 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 12 346 - -
Gma08g00394 396 ProSiteProfiles LysM domain profile. 111 157 IPR018392 -
Gma08g00394 396 ProSiteProfiles LysM domain profile. 176 219 IPR018392 -
Gma08g00394 396 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 1 12 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00394 Gma-Chr8 3324369 3326878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00394 10 365 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 41.144 1.65e-81 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00394 - - gmx:100819382 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00394 08 3324369 3326878 Gma08g00394 08 3324369 3326878 ECH