LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma06g02105	ATGGATCCAACCAAGAAGCGCAAGCTCGACGAGAACGGCTTCAACAACAACGACTCTTCCGACCCCCTCAAGCTCTCCCCCTCCGAAGTCCGCAAGCTCATCGAGCGCTTCACCTCCGACCAGCTCCTCGACATCCTCCAGGACGCGGTGGCGCGCCACCTCGACGTCCTTGCCGCCGTGCGCGCCGTCGCGGACCCTGACGTCTCCCAGCGCAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCACCACCGACGGCCTCCGCTCGCTCTTCTCCACCTTCGGCGACCTCGAGGAGGCCGTTGTCATCCTCGACAAGGCCACTGGCAAGTCCAAGGGATACGGCTTCGTCACCTTCCGCCACGTCGACGGCGCGCTTCTCGCCCTCCGCGAGCCCAGCAAGCGCATCGACGGCCGCGTGACGGTCACGCAGCTCGCCGCCGCCGGGAACTCCGCGTCGAACGTCAACCCCGCTGACGTAGCTCTCCGTAAGATCTACGTCGCCAACGTGCCGCCGGACCTGCCCGCGGACAAGCTTCTCGCGCACTTCTCCGTGTACGGCGAAATCGAAGAAGGTCCGTTAGGGTTTGATAAACAAACAGGAAAGTCGAAAGGGTTTGCTTTATTTGTTTATAAGTCTCCCGAGGGTGCTCAGGCCGCATTGATAGATCCTGTGAAGACTGTGGAAGGGAGGCAGTTGAGTTGTAAGTTGGCGATTACTGATGGGAAGCAGGGAAAGCGGGTAGGGCCGGACTCGGCCCAGGCCCATCACGGGAATGTTCAGCACGGGCATGGAGATGGAGTGGGGGCGGGAATGGGGATGCCTCCTAATGCGGGGTCCGGGCCTGGGCAGTATGGTGGACCTGGACAGTATGGGCCCCCGGTTGGGATGGGTTCTTATGGTGGGTTTGGCGGACAGCCTCCGATGGGCAATCATAACCATCCTCTTAATTCGACGAATCCTGTGCCGGGTTCTTTGGCAGGTGCTGGTGGGTATGGTGGTGGGATGGGTGGGCCATATGGTGGGTACGGTGGTGGACCTGGACCGGGGTCGACTGGCTTTGGCGGTGCTGGTGGGATGGGAGGAGGtggtggaggtgttggtggtggcgctggtggcgggcttggtggtgctggtggtggtAGTTCTATGTATAGATTGCCGGGTTCGGGCGGAATGCCTGCTGGTGGTACTGGAGGGTATCCGGATAGTGGACACTATGGTTTATCAGCTTCCTCTGGGTACCAGAATCAGCATCACCCTCCTTCTGGAACTTCACCTATGCCTAGGGTTCCGCCTGGTTCGATGTATCCCAATATGCCCCCTTACTACTGA	1335	0.5805	MDPTKKRKLDENGFNNNDSSDPLKLSPSEVRKLIERFTSDQLLDILQDAVARHLDVLAAVRAVADPDVSQRKLFIRGLGWDTTTDGLRSLFSTFGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSASNVNPADVALRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKSPEGAQAALIDPVKTVEGRQLSCKLAITDGKQGKRVGPDSAQAHHGNVQHGHGDGVGAGMGMPPNAGSGPGQYGGPGQYGPPVGMGSYGGFGGQPPMGNHNHPLNSTNPVPGSLAGAGGYGGGMGGPYGGYGGGPGPGSTGFGGAGGMGGGGGGVGGGAGGGLGGAGGGSSMYRLPGSGGMPAGGTGGYPDSGHYGLSASSGYQNQHHPPSGTSPMPRVPPGSMYPNMPPYY	444

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma06g02105	444	MobiDBLite	consensus disorder prediction	1	25	-	-
	Gma06g02105	444	Gene3D	-	154	268	IPR012677	-
	Gma06g02105	444	PANTHER	UBP1-ASSOCIATED PROTEIN 2C	1	408	-	-
	Gma06g02105	444	CDD	RRM_RBM24_RBM38_like	163	238	-	-
	Gma06g02105	444	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	71	160	IPR000504	GO:0003723
	Gma06g02105	444	MobiDBLite	consensus disorder prediction	395	444	-	-
	Gma06g02105	444	CDD	RRM_RBM24_RBM38_like	71	146	-	-
	Gma06g02105	444	Gene3D	-	51	153	IPR012677	-
	Gma06g02105	444	PANTHER	GEO13361P1-RELATED	1	408	-	-
	Gma06g02105	444	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	163	255	IPR000504	GO:0003723
	Gma06g02105	444	MobiDBLite	consensus disorder prediction	425	444	-	-
	Gma06g02105	444	SMART	rrm1_1	72	144	IPR000504	GO:0003723
	Gma06g02105	444	SMART	rrm1_1	164	236	IPR000504	GO:0003723
	Gma06g02105	444	MobiDBLite	consensus disorder prediction	409	424	-	-
	Gma06g02105	444	MobiDBLite	consensus disorder prediction	243	325	-	-
	Gma06g02105	444	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	73	140	IPR000504	GO:0003723
	Gma06g02105	444	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	165	222	IPR000504	GO:0003723
	Gma06g02105	444	SUPERFAMILY	RNA-binding domain, RBD	151	268	IPR035979	GO:0003676
	Gma06g02105	444	SUPERFAMILY	RNA-binding domain, RBD	64	146	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma06g02105	Gma-Chr6	36262275	36267233	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma06g02105	159	238	C2H2 Transcription Factor Family	AT2G19380	38.750	2.33e-10	60.8

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma06g02105	06	36262275	36267233	Gma12g01490	12	30704951	30712256	ECH
	Gma06g02105	06	36262275	36267233	Gma06g02105	06	36262275	36267233	ECH