Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01901 ATGCAATCTCAAAGTTCAGATACGTTTCCCTCTCACAATCGCAATGACCCAATTTCCTATTATGACCCAGCATTTTACTACTACAATAGCAGACCCTTTTTCATTGACTCTGAAAGCAACCCAACATCAAAACAAGAAAACAATAACAACAACTGTGACCTTGTTCCTTCTCCTCCTCCTCCTTTGTCCTTTTTCCACTTTCCTTCTCCAACCTTTGAAGATACTCAAAATCAAATTTTCCTCGAACAACGCCACGATTTTCTCCTTCAGTTTTACCATCAACCTCTGCCTCAAGACCCCGAGCCTCAACCTGTTATTACCACCATGGATCTTTCTGTTAAAAAGAGTGATCAGATCCAAAGAAAAAGAGTACCTGGCAAGAGAGATAGGCACAGCAAGATCAACACTGCAAGAGGGTTGAGAGATCGGAGAATGAGACTTTCCCTTGAAGTTGCAAAGAGGTTTTTTGGCCTTCAAGATATGCTGAACTTTGACAAAGCAAGCAAGACTGTGGAGTGGTTACTGAACCAAGCAAAAGTTGAAATCAATCGACTAGTGAAAGAGAAACAGAAGCAGCAGCAGCAGAAGAAGAAGAAGGAGAATGATCATCATTATTATCAAAGTTGTAGCAGTGCTAGTTCGGAATGTGATCAAGAAGGTGTGTCTTGTCTTGATGAGGTTGTGGTGAGTGGAGATCAAGAACAACAACAAGAGAGGGTCGAAAAAGTTGTGAAGAGAAAGGTCAAAAACTCTAGAAAAATCAGTGCATTTGACCCTCTTGCAAAAGAGTGTAGGgaaagggcaagagaaagggcaagagagagaacaagagaaaAGATGAGAAATCGTGGAGTGCTAGCTGAAGAATCAAAGCAATGTGGAGAGGAAACAAATCAGGATCTGATCCAATTGGGTTCTTGGAACCCCTTTGAAACAGGAGATCAAGAATCTGCAGGTGCCAAGAGAACTACTACTCACAGTGTTGCTGAGCATCCTTCTTCCTTGGACGTGATTACTATTGAGGCTAAAGAACAAAGCTACCACGCAGCAAAGGAGCATGATGATGATGATGACGATTCTTTGGTTGTTTTGAGCAAATGGAGCCCCTCCTTGATTTTCAATAACTATGGATTCTCTCAAGAT 1143 0.4016 MQSQSSDTFPSHNRNDPISYYDPAFYYYNSRPFFIDSESNPTSKQENNNNNCDLVPSPPPPLSFFHFPSPTFEDTQNQIFLEQRHDFLLQFYHQPLPQDPEPQPVITTMDLSVKKSDQIQRKRVPGKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLNFDKASKTVEWLLNQAKVEINRLVKEKQKQQQQKKKKENDHHYYQSCSSASSECDQEGVSCLDEVVVSGDQEQQQERVEKVVKRKVKNSRKISAFDPLAKECRERARERARERTREKMRNRGVLAEESKQCGEETNQDLIQLGSWNPFETGDQESAGAKRTTTHSVAEHPSSLDVITIEAKEQSYHAAKEHDDDDDDSLVVLSKWSPSLIFNNYGFSQD 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01901 381 Coils Coil 175 202 - -
Gma06g01901 381 ProSiteProfiles TCP domain profile. 127 185 IPR017887 -
Gma06g01901 381 MobiDBLite consensus disorder prediction 268 334 - -
Gma06g01901 381 MobiDBLite consensus disorder prediction 296 332 - -
Gma06g01901 381 PANTHER TRANSCRIPTION FACTOR TCP18 25 367 - -
Gma06g01901 381 Pfam TCP family transcription factor 126 282 IPR017887 -
Gma06g01901 381 MobiDBLite consensus disorder prediction 37 53 - -
Gma06g01901 381 MobiDBLite consensus disorder prediction 37 59 - -
Gma06g01901 381 ProSiteProfiles R domain profile. 262 279 IPR017888 -
Gma06g01901 381 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 25 367 IPR005333 GO:0003700
Gma06g01901 381 MobiDBLite consensus disorder prediction 268 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01901 Gma-Chr6 21174280 21175422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01901 98 276 TCP Transcription Factor Family AT3G18550 38.624 1.24e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gma06g01901 TCP 1.2e-44 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01901 06 21174280 21175422 Gma04g01459 04 36208683 36210461 ECH
Gma08g02386 08 23459544 23460769 Gma06g01901 06 21174280 21175422 ECH
Gma06g01901 06 21174280 21175422 Gma06g01901 06 21174280 21175422 ECH
Gma04g01459 04 36208683 36210461 Gma06g01901 06 21174280 21175422 GST