Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01179 ATGGACACAGCTCAGTGGGCACAGGGTATTGGAGTGGTTAAACAACCTACTATGGAAGGAGGTTCAAAGCCTCCTCCTCCTCCTATGTTGGAGAGAAGGGCAAGGCCTCAAAAGGATCAAGCTTTGAACTGTCCAAGGTGCAATTCAACCAACACCAAATTCTGCTACTACAACAACTATAGCCTCTCTCAGCCAAGGTACTTTTGCAAGACATGTAGAAGGTATTGGACTGAGGGTGGTTCTCTCAGAAACGTTCCTGTCGGTGGTGGCTCTAGAAAGAACAAAAGATCAACCCCATCAGCGCCACCACCATCATCAGCATCAGCACAAGCAAAGAAGCTTCCTGATCTCACAACACCTAATTTCCCTCAATCTGCTTCCCAGGACCCTAAGATCCACCAAGGCCAAGACCTTAACCTAGCATATCCACCAGCTGAAGACTACAACACTGTGTCCATGTCAAAGCTCATTGAGTTGTCTGCCATGGAGCTTCTCAAGACTGGGATTGCTGCTGCTTCCTCAAGGGGTTTGAACTCCTTCATGCCAATGTATAATTCAACTCATCATGGATTTCCCTTGCAAGACTTTAAGCCACCACATCATGGCCTTAACTTCAGTCTTGAGGGGTTTGATAATGGTACTTATGGGGGTCTTCATCAGGGAATTCAAGAGGATCCTACTACTGGTGGTGCACGGATCTTGTTTCCTACTGTGGAGGATTTGAAGCAGCAGGTTCCAAGCACAAATGAGTTTGATCATCAGCAGAATAGAAGTCAAGAGGGTTCAGCTCATGGGTATTGGAATGGCATGTTAGGTGGAGGATCATGGTAG 831 0.4681 MDTAQWAQGIGVVKQPTMEGGSKPPPPPMLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTPSAPPPSSASAQAKKLPDLTTPNFPQSASQDPKIHQGQDLNLAYPPAEDYNTVSMSKLIELSAMELLKTGIAAASSRGLNSFMPMYNSTHHGFPLQDFKPPHHGLNFSLEGFDNGTYGGLHQGIQEDPTTGGARILFPTVEDLKQQVPSTNEFDHQQNRSQEGSAHGYWNGMLGGGSW 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01179 276 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 24 272 - -
Gma06g01179 276 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 272 IPR045174 GO:0003700|GO:0006355
Gma06g01179 276 MobiDBLite consensus disorder prediction 83 133 - -
Gma06g01179 276 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Gma06g01179 276 Pfam Dof domain, zinc finger 39 96 IPR003851 GO:0003677|GO:0006355
Gma06g01179 276 MobiDBLite consensus disorder prediction 1 42 - -
Gma06g01179 276 MobiDBLite consensus disorder prediction 91 133 - -
Gma06g01179 276 MobiDBLite consensus disorder prediction 251 276 - -
Gma06g01179 276 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01179 Gma-Chr6 11131488 11132950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01179 29 276 C2C2-Dof Transcription Factor Family AT3G61850 43.357 1.58e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma06g01179 zf-Dof 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01179 - - gmx:778115 554.288