Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01008 ATGCCAAATCCAAATCCAAAGCACCTTTTCCACGCCACTCTCTTCCTCTCGATACTTCTCCAGGCGCTGTCTAAATCCACGATTGAGCCATGCTCGAACTCCGACTCATGCAACGCGCTTCTGGGATACACCCTCTACACGGACCTCAAAGTCTCCGAAGTGGCGTCGCTCTTCCAAATCGACCCCATCGCGCTTCTCACCGCGAACGCCATCGACATCTCTTACCCCGACGTGGAGCACCACATTCTTCCCTCGAAGCTCTTCCTCAAAGTCCCCATCTCCTGCTCCTGCGTCGACGGCATTCGCAAATCCGTCGCTACTCACTACAAGACCCGCCCCTCCGACACCCTCTCCTCCATCGCCGACGCCGTCTACGCCGGCCTCGTCTCCTCCGACCAGCTCCGCGAGGCTAACTCCATTTCCGACCCTTCAGTTCTTGATGTGGGCCAAAACCTCGTCGTTCCTCTCCCTTGCACCTGCTTCAACGGCTCCGATAACTCTCTCCCCGCGATTTACCTCTCTTATGTTGTTCGCCCCGTTGATACCCTCGCTGCCGTTGCTGCTAGGTACTTCACCACTCTCACTGATTTGATGAATGTTAATGCCATGGGAAGCACTGCTATTAACGACGGTGATATCCTCGCTGTTCCAATACCCGCTTGTGCTTCGAATTTTCCGAAATCCGCCTCTGATTTTGGCATGCTTGTCCCTAATGGAAGCTACGCCATTACCGCGGGGCACTGTGTGCAGTGTAGCTGTGGACCCAAAAACCTTGAGTACCGACTAAGCAACTCTTTCCTTTCTGTTTCTTATTTTATTTATTTATTATTCTTTCTTCACTTCATGCAATGTAGAGGCAGCAACCTTATGCTTGGGAATGTTACCGTTCAGCAGACTAGTGGTGGTTGCAATGTTACTGCTTGCAATTATGATGGCATTGTTAATGGCAGCATTGTAACAACGTTGTCCCCTTCTCTTCAGCCTCAATGTCCAGGGCTGCAGGAATTCCCTCCTCTTGTTGCCCCACCTACAACCGTTGCAAGGGACACGGTGTTTGCACCAGCACCAGCACCACTGTTCGATGGAGATGGTCCAGCATCACCCAAATCATCGCTGGTGCCTTCAACGGGGCTTCCAGGAGGATTCTCTCCTGCAAATGGCCCTATTAGCGGCATATCTTCTGGTGCTTCGGCTGCATGCTCCTTGGTGAAACCATTTCCCGCTTTGACGTATGCACTAGTGTTATTGCTTGTCAAGTTGATGATACCCGTGGCATTGTTTCATCTCACGCTTAGCCATTTATTTTTTGGTGCTTTGCTGAATTATCGTGTTTTTCTACAGTCAGTAATTTTAGAAGGCAAACTTCAATTGGAAAAGAACTTGGGCCTAAAATCCCGGGAAGTGTTAATTGCATCGTTGAGCTGCCAAGAAATGAGTTGGAAGTGA 1446 0.5035 MPNPNPKHLFHATLFLSILLQALSKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSKLFLKVPISCSCVDGIRKSVATHYKTRPSDTLSSIADAVYAGLVSSDQLREANSISDPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVRPVDTLAAVAARYFTTLTDLMNVNAMGSTAINDGDILAVPIPACASNFPKSASDFGMLVPNGSYAITAGHCVQCSCGPKNLEYRLSNSFLSVSYFIYLLFFLHFMQCRGSNLMLGNVTVQQTSGGCNVTACNYDGIVNGSIVTTLSPSLQPQCPGLQEFPPLVAPPTTVARDTVFAPAPAPLFDGDGPASPKSSLVPSTGLPGGFSPANGPISGISSGASAACSLVKPFPALTYALVLLLVKLMIPVALFHLTLSHLFFGALLNYRVFLQSVILEGKLQLEKNLGLKSREVLIASLSCQEMSWK 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01008 481 CDD LysM 174 216 IPR018392 -
Gma06g01008 481 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 3 402 - -
Gma06g01008 481 ProSiteProfiles LysM domain profile. 107 154 IPR018392 -
Gma06g01008 481 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 3 402 - -
Gma06g01008 481 Pfam LysM domain 175 217 IPR018392 -
Gma06g01008 481 Pfam LysM domain 109 155 IPR018392 -
Gma06g01008 481 SUPERFAMILY LysM domain 173 218 IPR036779 -
Gma06g01008 481 Gene3D LysM domain 101 161 IPR036779 -
Gma06g01008 481 Gene3D LysM domain 164 228 IPR036779 -
Gma06g01008 481 SMART LysM_2 108 155 IPR018392 -
Gma06g01008 481 SMART LysM_2 174 217 IPR018392 -
Gma06g01008 481 ProSiteProfiles LysM domain profile. 173 216 IPR018392 -
Gma06g01008 481 CDD LysM 107 154 IPR018392 -
Gma06g01008 481 SUPERFAMILY LysM domain 107 156 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01008 Gma-Chr6 9415899 9420170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01008 5 432 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 61.839 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01008 - - gmx:100777292 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01008 06 9415899 9420170 Gma06g01008 06 9415899 9420170 ECH
Gma04g02390 04 54252505 54254760 Gma06g01008 06 9415899 9420170 GST