Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00413 ATGTTCAACCATGATTCCTTCTCCGCTTTCAGCGACTGCAACAGCGACAGATCCGCCGAATTTCCCACGCCGTCTTCTGAGAATTCCGACGAACTCATTCGGCAACTTGTTCTCAAATTGGTCTCCTGTTCCATTGAGGAACAAAAACAAGCGACGATGGAAATCAGGTTACTCGCCAAGAACAAGCAAGAGAACCGCCCCAAAATCGCAAAAGCCGGCGCCATTCAGCCCTTGATTTCACTCTTACCATCATCAGACCTTCAGCTTCAGGAATACGTGGTGACCGCGATTCTGAATCTCTCCCTCTGCGACGAGAACAAGGAGCTCATCGCttctcatggagcggtgaaggcgctggtggcgccgctggagagagggacggcgacggcgaaggagaacgcggcgtgcgccttggttcgtttatcgcacaacagggaggaagagaaggtggcgatagggagggcgggggcgattccgcatctggtgaagcttctagaaggagggggattgcgcgggaagaaggacgcggcgactgcgctctacgcgctgtgttcggccaaggagaataaggtgagggcggtgagggcggggattatgagggggctggtggagctgatggcggacttggggtcgagcatggtggacaaggcggtgtacgtggtgagcgtggtggtgggggtggcggaggcgagggcggcgctggtggaggaaggagggattccggtgctggtggagatagtggaggtggggacgcagaggcagaaggatattgcggctggggtgttgttgcagatttgtgaggaGAGTGTGGTGTACCGTACTATGGTGTCCCGCGAAGGAGCCATTCCTCCATTGGTTGCTTTGTCCCAGTCAAATTCCAATCGCGCCAAGCAAAAGGCTCAGAAACTAATACAACTTCTACCACAACCAAGATCCGCCAATGGCGCTGCTCCCACCTCGGAAATGCCACCAATCCAACACTGA 984 0.2632 MFNHDSFSAFSDCNSDRSAEFPTPSSENSDELIRQLVLKLVSCSIEEQKQATMEIRLLAKNKQENRPKIAKAGAIQPLISLLPSSDLQLQEYVVTAILNLSLCDENKELIASHGAVKALVAPLERGTATAKENAACALVRLSHNREEEKVAIGRAGAIPHLVKLLEGGGLRGKKDAATALYALCSAKENKVRAVRAGIMRGLVELMADLGSSMVDKAVYVVSVVVGVAEARAALVEEGGIPVLVEIVEVGTQRQKDIAAGVLLQICEESVVYRTMVSREGAIPPLVALSQSNSNRAKQKAQKLIQLLPQPRSANGAAPTSEMPPIQH 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00413 327 Pfam Armadillo/beta-catenin-like repeat 148 184 IPR000225 GO:0005515
Gma06g00413 327 Pfam Armadillo/beta-catenin-like repeat 63 101 IPR000225 GO:0005515
Gma06g00413 327 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 73 115 IPR000225 GO:0005515
Gma06g00413 327 Gene3D - 14 171 IPR011989 -
Gma06g00413 327 Gene3D - 172 313 IPR011989 -
Gma06g00413 327 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 5 317 - -
Gma06g00413 327 SUPERFAMILY ARM repeat 30 307 IPR016024 -
Gma06g00413 327 SMART arm_5 103 143 IPR000225 GO:0005515
Gma06g00413 327 SMART arm_5 62 102 IPR000225 GO:0005515
Gma06g00413 327 SMART arm_5 186 226 IPR000225 GO:0005515
Gma06g00413 327 SMART arm_5 145 185 IPR000225 GO:0005515
Gma06g00413 327 SMART arm_5 227 267 IPR000225 GO:0005515
Gma06g00413 327 MobiDBLite consensus disorder prediction 1 27 - -
Gma06g00413 327 PANTHER U BOX DOMAIN-CONTAINING 5 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00413 Gma-Chr6 3543977 3545401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00413 24 314 U-box Gene Family AT2G23140 48.148 1.19e-75 242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02260 17 40461247 40463670 Gma06g00413 06 3543977 3545401 PCT
Gma14g00779 14 8044265 8046357 Gma06g00413 06 3543977 3545401 PCT
Gma06g00413 06 3543977 3545401 Gma17g02260 17 40461247 40463670 PCT
Gma06g00413 06 3543977 3545401 Gma14g00779 14 8044265 8046357 PCT