LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma06g00369	ATGCAAGGGCAGAGAGGTACAGTTGGTTCAATGCCTGAAACCTTAGAATTTGATTGTGGATCTGCATCAGGCAATTCTACCGTGGATCAGCAAATTTGCTGGAATAATGTGAATCCTGCAGAGAATCAAATACCTGATTATATACTTTCTCCTGGTGATATGAACTCATCTTATGGGAATTCCATTATTAATCGTGAATGGCAAAATTTGAGTGGATGGAGCTTAGGGGAGCCAAGTTCCAGTAATACACCAAATGAGGTTAACAATAATGAGCAAAAAAGAGAACTTGGATGGTCATCAACCATTACTGCTGGTGCATTGGCTGGTCCAAGACTAGAAGAAAGGCGCCTTGAACCAGCCAATGCTCTTTCACTAGACAATGTCAATACAGGTCCTATGTACACGCGTAGCCCCAATTCTCGTTTGATGTCCCAGAATCTCAACTTAAATGCAGGTTTAGCGGACAATGGCAGTGATAATAGTCAACATCTGGAGCTCCCTAACTTAAACAAGTCTAGTGGGTCAGCAAACGAGTGTATACCACCTAATGTTGGATCTGGTTCTTTTCTGCTTCCTTCTGGAAATAATGGCTTCCTGGTAGAAGATACTGATGGTAGGCCAGGTTGTTCTCATGATACTCGACGTGTCTCTTGTAAAAGAAAGGCTGTTGAAGGAAATAATGGACAATCTTCAGATGCTGGGAGTTCTAGCTACAGTCAGCATACAGATGGTAGTGCTTGGCACACCATTCCTACTCAGGTTAATGCTGGAAGCAGTTCAAGAAGATCTATTTCCTCAGAACAGGTAAATGCAAGACTTGGCCTGGGAATGGGGGATGGAGCATCTGAAAACGTTCCTGATTCAAACATTGCAGGAAGCTCAGAAAGCTTTCACAGGAATTTCCGTTTGAGGTTAAATCCTTCAAACCCACCAAATTCTGTTCCTCCCACTGCATTCTCAACTGGGAGCATGATTAGGCATTCTGGTGTCCCTCCATCCTCCCAAGTATCCCAAAGGCTTCATTTTGTTGATAATTCTCTGAACTTGAGGTCAGCACCACCGATAGATAATGTGGTTCCTCAAAGCCAGCCACTTGTAATTCATGTTCCTGCTTTGCCTAGGAATAGACAATCATTTAGATGGAGTGGTGGTTCTAGCTCCAGAAACATCCATTCATCAAACTCAGTTATATGCGCAGACAGGGATCAGCAGGATGCAAGCTCAAGAAGAATGTCTAGAAATATGTTAGAACATCCAGTCTTTGTACCTGCAACTGATTTAAGAAATTTAGTTCAAAATCCAACAGTTAGAGCTTCAAGTTCAAGTAGTGAAAATTTAAGTATTCCCGGAAATGTTGCTTCTTCATCACGGACTGGATCAAATCCAGCTACCAATCCCTCATCTGCCACAACTTTTTCTCGTTCTAATCCTCCACAGCATCCACGGAGGTTATCTGAATATGTTCGTCGTTCGTTGTTTTCTCCCAGTTCTGATGCTATTGGAAGTCCAAGCCATAATTATTCTTCCTTGCGCTCTGGTCTTTCTACATCTGAACCAAGGGCGTTATCATCTGGGAGTGGGGCAAACCCGAGATCAGCTTCATGGTTGGAGAGGCAAGGTGATAGTGAATTTGGAATTCCTTATTCACTACGTACTTTGGCTGTTGCAAGTGAAGGAGGAAGTAGTAGACTTGTATCTGAGCTCCGCAATGTTTTGGGCCTTATGCGTAGAGGTGGGAATGTGCGATTTGAGGATGTTGTGATCCTTGATCATCAATCATTTCTTTCTGGAATAGCTGATGTTCGTGATCGGCACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGTTGTTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAACTGTATTGAAACACTTGAAACAGAGAAAGCACTCGGCTGAAAAAGGGCCTCAGATTGATGCAGAACCCTGTTGTGTTTGTCAGGAGGATTATGGTGATGAGGATGATATTGGAACGCTTGATTGTGGCCATGATTTCCATAGCAGCTGTATCAAACAGTGGTTAATGCATAAGAATCTTTGTCCCATTTGTAAGACAACGGGTTTGGCAACATGA	2127	0.4302	MQGQRGTVGSMPETLEFDCGSASGNSTVDQQICWNNVNPAENQIPDYILSPGDMNSSYGNSIINREWQNLSGWSLGEPSSSNTPNEVNNNEQKRELGWSSTITAGALAGPRLEERRLEPANALSLDNVNTGPMYTRSPNSRLMSQNLNLNAGLADNGSDNSQHLELPNLNKSSGSANECIPPNVGSGSFLLPSGNNGFLVEDTDGRPGCSHDTRRVSCKRKAVEGNNGQSSDAGSSSYSQHTDGSAWHTIPTQVNAGSSSRRSISSEQVNARLGLGMGDGASENVPDSNIAGSSESFHRNFRLRLNPSNPPNSVPPTAFSTGSMIRHSGVPPSSQVSQRLHFVDNSLNLRSAPPIDNVVPQSQPLVIHVPALPRNRQSFRWSGGSSSRNIHSSNSVICADRDQQDASSRRMSRNMLEHPVFVPATDLRNLVQNPTVRASSSSSENLSIPGNVASSSRTGSNPATNPSSATTFSRSNPPQHPRRLSEYVRRSLFSPSSDAIGSPSHNYSSLRSGLSTSEPRALSSGSGANPRSASWLERQGDSEFGIPYSLRTLAVASEGGSSRLVSELRNVLGLMRRGGNVRFEDVVILDHQSFLSGIADVRDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVLKHLKQRKHSAEKGPQIDAEPCCVCQEDYGDEDDIGTLDCGHDFHSSCIKQWLMHKNLCPICKTTGLAT	708

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma06g00369	708	MobiDBLite	consensus disorder prediction	223	265	-	-
	Gma06g00369	708	MobiDBLite	consensus disorder prediction	274	293	-	-
	Gma06g00369	708	MobiDBLite	consensus disorder prediction	205	221	-	-
	Gma06g00369	708	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1	1	707	-	-
	Gma06g00369	708	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	1	707	IPR045191	GO:0061630
	Gma06g00369	708	ProSiteProfiles	Zinc finger RING-type profile.	661	702	IPR001841	-
	Gma06g00369	708	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	625	705	IPR013083	-
	Gma06g00369	708	MobiDBLite	consensus disorder prediction	202	265	-	-
	Gma06g00369	708	SUPERFAMILY	RING/U-box	660	704	-	-
	Gma06g00369	708	MobiDBLite	consensus disorder prediction	434	480	-	-
	Gma06g00369	708	SMART	ring_2	661	701	IPR001841	-
	Gma06g00369	708	MobiDBLite	consensus disorder prediction	379	402	-	-
	Gma06g00369	708	Pfam	Ring finger domain	661	702	IPR001841	-
	Gma06g00369	708	MobiDBLite	consensus disorder prediction	434	483	-	-
	Gma06g00369	708	MobiDBLite	consensus disorder prediction	495	535	-	-
	Gma06g00369	708	MobiDBLite	consensus disorder prediction	379	410	-	-
	Gma06g00369	708	CDD	RING-H2_TTC3	660	702	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma06g00369	Gma-Chr6	3159395	3167037	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma06g00369	217	708	C3H Transcription Factor Family	AT2G15530	37.595	4.92e-72	246

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma06g00369	06	3159395	3167037	Gma06g00369	06	3159395	3167037	ECH
	Gma04g00375	04	3215459	3221761	Gma06g00369	06	3159395	3167037	GST
	Gma17g02307	17	41051574	41056759	Gma06g00369	06	3159395	3167037	PCT
	Gma06g00369	06	3159395	3167037	Gma17g02307	17	41051574	41056759	PCT