Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00336 ATGCAACCAACATCCAACGGCTCTGATTCGCAAGCGACGGAGCAGCGGACGCCGCCGCCCCAGTGGATGCCGATGCAGTACCCGGCAGCGGCGATGGTAATGCAGCACCACATGATGCCGCCTCAACATTACGCTCCTCCGCCGCCGCAGCCCTACATGGCCTACCACCACTACCAACAACAGCTGCCGCACGCCCTGCACGCGCACCATCAGGGATCCAGTGCCGAGAACAAGACCGTTTGGGTCGGCGATTTGCATCATTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCTTCCAACGGCGAGATTTCCTCAATTAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACATGGCACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATATTGATGCCTAACACAGAGCAACCTTTCCGCCTTAACTGGGCAACATTTGGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGCATGTTGCATGAAACATTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATGATGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAGACATCTGGCTACCAACAAGGAAGTCAGTCAAATGGCATATCCAGCCAATCTGAAGCTGATTCTACAAACACAACTatatttgtcggaggacttgactctaatgttacagctgaagatcttaagcaaccattctcccagtatggtgagatagtctctgttaaaatacctgttggaaaaggatgtggttttgtacaatttgCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAACGATTGGCAAACAAATGGTTCGTCTTTCATGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGCAGATTTCGGCAATGCTTGGAGTGGGGCGTATTATGGAGGGCCTGTTTATGATGGTTATGGATATGCTTTGCCACCATCTCACGACCCAAGCATATATGCTGCTGCTTATGGGGCTTACCCTATTTATGGAGGACACCAACAGCAAGTAAGCTGA 1221 0.43 MQPTSNGSDSQATEQRTPPPQWMPMQYPAAAMVMQHHMMPPQHYAPPPPQPYMAYHHYQQQLPHALHAHHQGSSAENKTVWVGDLHHWMDENYLHRCFASNGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWATFGTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDDERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGISSQSEADSTNTTIFVGGLDSNVTAEDLKQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRADFGNAWSGAYYGGPVYDGYGYALPPSHDPSIYAAAYGAYPIYGGHQQQVS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00336 406 CDD RRM1_SECp43_like 79 159 - -
Gma06g00336 406 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 15 405 - -
Gma06g00336 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 348 IPR000504 GO:0003723
Gma06g00336 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 158 IPR000504 GO:0003723
Gma06g00336 406 MobiDBLite consensus disorder prediction 1 20 - -
Gma06g00336 406 Gene3D - 77 157 IPR012677 -
Gma06g00336 406 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 15 405 - -
Gma06g00336 406 Gene3D - 170 246 IPR012677 -
Gma06g00336 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 250 IPR000504 GO:0003723
Gma06g00336 406 Gene3D - 253 355 IPR012677 -
Gma06g00336 406 MobiDBLite consensus disorder prediction 1 24 - -
Gma06g00336 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 147 IPR000504 GO:0003723
Gma06g00336 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 339 IPR000504 GO:0003723
Gma06g00336 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 242 IPR000504 GO:0003723
Gma06g00336 406 MobiDBLite consensus disorder prediction 251 272 - -
Gma06g00336 406 CDD RRM3_NGR1_NAM8_like 275 346 - -
Gma06g00336 406 SMART rrm1_1 79 154 IPR000504 GO:0003723
Gma06g00336 406 SMART rrm1_1 172 246 IPR000504 GO:0003723
Gma06g00336 406 SMART rrm1_1 277 344 IPR000504 GO:0003723
Gma06g00336 406 CDD RRM2_SECp43_like 170 249 - -
Gma06g00336 406 SUPERFAMILY RNA-binding domain, RBD 41 159 IPR035979 GO:0003676
Gma06g00336 406 MobiDBLite consensus disorder prediction 247 272 - -
Gma06g00336 406 SUPERFAMILY RNA-binding domain, RBD 170 349 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00336 Gma-Chr6 2930572 2938615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00336 80 358 Eukaryotic Initiation Factors Gene Family AT2G23350 28.767 1.96e-27 112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00336 06 2930572 2938615 Gma06g00336 06 2930572 2938615 ECH
Gma04g00348 04 2991053 2997140 Gma06g00336 06 2930572 2938615 GST
Gma17g02344 17 41443049 41447808 Gma06g00336 06 2930572 2938615 PCT
Gma14g00695 14 6977901 6981585 Gma06g00336 06 2930572 2938615 PCT
Gma06g00336 06 2930572 2938615 Gma17g02344 17 41443049 41447808 PCT
Gma06g00336 06 2930572 2938615 Gma14g00695 14 6977901 6981585 PCT