Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00272 ATGGATTCAGCTTGTGCAACCCTGAATGGCCGCCATCTAGCCAAAGTTAGTGAGGGAATTGGAAGAAACAGAACAAGTGGCTTCTGGGGTGAGAGTACGAGGGGAAGTGTGAACACAAAAAGGTTTTTGAGTGTTCAATCATGCAAGACTTCACGAACCAATAGGAATCTTAGAAACTCCAAGCCTGGAAGTGGAATTGCACGCGCTGTTCTCACATCAGACATCGACGAAGATTCCATGGCATTTCAAGGGGTACCCACTTTTGAGAAACCTGAAGTGGACCCAAAAAGTGTGGCTTCCATCATATTGGGTGGAGGTGCAGGAACTCGACTCTTTCCTCTTACTGGCAGAAGAGCCAAGCCAGCGGTTCCAATTGGAGGGTGTTATAGACTCATAGATATCCCCATGAGCAATTGCATCAATAGTGGCATCAGAAAAATTTTCATCTTGACGCAGTTCAATTCTTTCTCTCTCAACCGCCACCTGTCCCGTGCATACAGCTTCGGAAATGGCATGACTTTTGGAGATGGGTTTGTGGAGGTCTTGGCAGCTACTCAAACACCGGGTGAGGCTGGGAAGAAGTGGTTCCAAGGGACAGCTGATGCTGTAAGACAATTTATATGGGTTTTTGAGGATGCCAAGAACAAGAATGTTGAGCATATATTGATACTTTCTGGCGATCATCTTTACCGTATGGACTATATGGACTTTGTACAGAGACATGTTGACACAAATGCCGATATCACAGTTTCATGTGTACCCATGGATGACAGTCGGGCATCAGACTATGGACTGATGAAAATTGATAAAACAGGACGGATTATACAGTTTGCAGAAAAACCTAAGGGATCAGATCTAAAGGCAATGcgtgttgacaccactcttttagggttattgccacaagaagcagaaaaacatccttatattgcatccatgggtgtctacgtgtttaGAACTGAAACCTTGCTGCAACTATTAAGATGGAAATGTTCTTCATGCAATGACTTTGGATCTGAAATTATCCCATCTGCTGTGAATGAGCACAATGTCCAGGTGAGAAGGAATATTCTTTGTGTTCTTTTTGAAAATCTTAGAATGCTAATAAAAATAACTCTCTTTTTTCATTCTCAGGCATATTTGTTCAATGACTACTGGGAAGATATTGGAACTATAAAGTCCTTCTTTGATGCAAATCTTGCTCTAACAGAACAGCCTCCTAAATTTGAATTCTATGATCCAAAGACACCTTTCTTCACTTCCCCCAGATTCCTACCACCTACCAAAGTAGAAAAATGCAAGATTGTGGATGCAATTATATCTCATGGTTGCTTCTTGAGGGAGTGCAGCGTTCAACATTCTATTGTTGGAGTACGCTCACGTTTGGAGTCTGGTGTGGAGCTTCAGGATACGATGATGATGGGTGCTGACTATTATCAAACTGAGTATGAAATTGCATCTCTGGTGGCAGAAGGGAAGGTTCCAATTGGTGTCGGGGCAAATACTAAAATCAGGAATTGCATAATCGACAAGAATGCCAAGATAGGAAGAAATGTGATCATAGCAAACACCGATGGTGTTCAAGAAGCTGACAGGGCAAAGGAAGGATTCTACATTAGGTCGGGCATCACAGTTACATTAAAAAATGCAACAATCAAAGATGGAACAGTTATATGA 1674 0.4014 MDSACATLNGRHLAKVSEGIGRNRTSGFWGESTRGSVNTKRFLSVQSCKTSRTNRNLRNSKPGSGIARAVLTSDIDEDSMAFQGVPTFEKPEVDPKSVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRAYSFGNGMTFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVEHILILSGDHLYRMDYMDFVQRHVDTNADITVSCVPMDDSRASDYGLMKIDKTGRIIQFAEKPKGSDLKAMRVDTTLLGLLPQEAEKHPYIASMGVYVFRTETLLQLLRWKCSSCNDFGSEIIPSAVNEHNVQVRRNILCVLFENLRMLIKITLFFHSQAYLFNDYWEDIGTIKSFFDANLALTEQPPKFEFYDPKTPFFTSPRFLPPTKVEKCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVELQDTMMMGADYYQTEYEIASLVAEGKVPIGVGANTKIRNCIIDKNAKIGRNVIIANTDGVQEADRAKEGFYIRSGITVTLKNATIKDGTVI 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00272 557 Pfam Nucleotidyl transferase 100 403 IPR005835 GO:0009058|GO:0016779
Gma06g00272 557 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 195 203 IPR005836 GO:0005978|GO:0008878
Gma06g00272 557 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 88 422 IPR029044 -
Gma06g00272 557 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 99 521 IPR011831 GO:0005978|GO:0008878
Gma06g00272 557 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 310 320 IPR005836 GO:0005978|GO:0008878
Gma06g00272 557 SUPERFAMILY Nucleotide-diphospho-sugar transferases 98 518 IPR029044 -
Gma06g00272 557 CDD LbH_G1P_AT_C 425 551 - -
Gma06g00272 557 SUPERFAMILY Trimeric LpxA-like enzymes 419 557 IPR011004 -
Gma06g00272 557 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 104 123 IPR005836 GO:0005978|GO:0008878
Gma06g00272 557 Gene3D Hexapeptide repeat proteins 423 557 - -
Gma06g00272 557 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 1 351 - -
Gma06g00272 557 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 376 557 - -
Gma06g00272 557 CDD ADP_Glucose_PP 101 388 - -
Gma06g00272 557 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 376 557 IPR011831 GO:0005978|GO:0008878
Gma06g00272 557 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 1 351 IPR011831 GO:0005978|GO:0008878
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00272 Gma-Chr6 2425373 2429462 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00286 04 2496611 2500994 Gma06g00272 06 2425373 2429462 GST
Gma17g02411 17 42103884 42108036 Gma06g00272 06 2425373 2429462 PCT
Gma14g00624 14 6091892 6096299 Gma06g00272 06 2425373 2429462 PCT
Gma06g00272 06 2425373 2429462 Gma17g02411 17 42103884 42108036 PCT
Gma06g00272 06 2425373 2429462 Gma14g00624 14 6091892 6096299 PCT