Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00080 ATGAAGATCCAGTGTGATGTGTGTGACAAAGTGGAAGCCTCCGTCTTCTGTCCTGCAGATGAAGCTGCTCTTTGCCATAGCTGTGATCGCACCATTCACCGCGCCAACAAGCTTGCAACCAAACACGCCCGTTTCTCTCTCCACTACCCCACCTCCAAAGACTTCCCTCTTTGTGATATATGCCAAGAGAGGCGTGCATATCTATTTTGCCAAGAAGACAGGGCGTTGTTATGCAGGGAATGCGACGTTCCTATCCACAGAGCCAATGAGCATACCCAAAAGCATAACAGGTTTCTTCTCACGGGTGTGAAGCTCTCTGGTACTTGTTTAGATCCTGCTTCGTCCTCCACCAATTACACCAATAATAATAGAGTCACTGGCTCTGAAGGAAGAAACGACGCTCGATCTAGAATGAACAGACCCAGATCATCAGTTTCCAATGAAGAAAATGCAAGTAATTCTTCTTGCAAGGTTGAAGACAACGTGGCTAGTGACACTGGTTCGATTTCAACTAGCAGCATTTCTGAGTACTTGATTGAAACAATACCCGGTTACTGTTTTGAAGACCTCCTTGATGCTTCGTTTGCACCTAATGGTTTCTGTAAgAAGCAGAACTTTGATCATCCCTGGGCGTTTCAGGACCAAAAGCGAACAAGTGGAGACACTATGGCCGTGCCGTTCCTGAAACTAGTCATCCATTGA 702 0.4615 MKIQCDVCDKVEASVFCPADEAALCHSCDRTIHRANKLATKHARFSLHYPTSKDFPLCDICQERRAYLFCQEDRALLCRECDVPIHRANEHTQKHNRFLLTGVKLSGTCLDPASSSTNYTNNNRVTGSEGRNDARSRMNRPRSSVSNEENASNSSCKVEDNVASDTGSISTSSISEYLIETIPGYCFEDLLDASFAPNGFCKKQNFDHPWAFQDQKRTSGDTMAVPFLKLVIH 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00080 233 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 209 - -
Gma06g00080 233 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Gma06g00080 233 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Gma06g00080 233 MobiDBLite consensus disorder prediction 114 129 - -
Gma06g00080 233 CDD Bbox1_BBX-like 57 100 - -
Gma06g00080 233 MobiDBLite consensus disorder prediction 114 160 - -
Gma06g00080 233 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 209 - -
Gma06g00080 233 CDD Bbox1_BBX-like 5 47 - -
Gma06g00080 233 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gma06g00080 233 SMART bboxneu5 53 100 IPR000315 GO:0008270
Gma06g00080 233 MobiDBLite consensus disorder prediction 139 160 - -
Gma06g00080 233 Gene3D Classic Zinc Finger 1 100 - -
Gma06g00080 233 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gma06g00080 233 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00080 Gma-Chr6 721842 723021 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gma06g00080 zf-B_box 2.6e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00080 06 721842 723021 Gma06g00080 06 721842 723021 ECH
Gma06g00080 06 721842 723021 Gma11g01013 11 8607770 8609771 ECH
Gma06g00080 06 721842 723021 Gma12g00330 12 2741777 2745309 ECH
Gma06g00080 06 721842 723021 Gma11g00680 11 5679949 5683681 ECH
Gma06g00080 06 721842 723021 Gma01g01720 01 52898828 52901897 ECH
Gma04g00085 04 751498 753238 Gma06g00080 06 721842 723021 GST
Gma17g02437 17 42361363 42363212 Gma06g00080 06 721842 723021 PCT
Gma14g02110 14 52235560 52237258 Gma06g00080 06 721842 723021 PCT
Gma06g00080 06 721842 723021 Gma17g02437 17 42361363 42363212 PCT
Gma06g00080 06 721842 723021 Gma14g02110 14 52235560 52237258 PCT