Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01350 ATGTTTGCAGGGAAAGGGGCTGTTTGGTTCTCCAGAGCGGTGGCGTTGGCAGCAATCGCGGTGGTAGCTTGCGTTGGCCTTACACAGGCCCAACCCGAGGCCAGGTTCAACTGCAACAGCGCGAACATCCCCACGTGTCGCGCGCTCATAAGCTACTCTCACCCGAACACCACCACCCTCGGCGACATCCAAAAGCTCTTCAACGTGAAACACATCCTCGACATCGTGGGAGCGAACAACCTCCCAAGCAACGCCACAAAAACATACGCGGTGGGCCCCAACGAGGTTGTGAAGGTCCCTTTCCCGTGCAGGTGCAGCAACAACACGGGACTCTCGGACCGTGTTCCGCTGTACAGGATCAAGAAGGGGGACACGCTGTACTACATCGCGACGACGACGTTCGCGGGTCTGATGAAGTGGCCGCAGATCCAGGTGGCCAATAACATAGCCAACGCGAATAATATCACCACCGGGGACATGCTTTATATTCCGCTGCCGTGTAGCTGCGACGAGGTGGGTGGGAAGAGTGTGGTGCACTATGCGCATCTTGTGGCGCCGCAGAGCACCGTGGAGGGGATTGCGGAGGAGTTTGGTACCACTCAGCAGATACTGCTCAACCTTAATGGAATTTCTGACCCCAAAAATCTTCAGGCAGGGCAGATTCTCGATGTTCCCCTCCAAGCTTGTTCCTCGAATGTGAAAAATGATTCATTGGACTATCCCTTGCTTGTCCCAAATGCTACTTACGCCTATACTGCCCATGAATGCGTCAAATGCAAGTGTGACTCCAGTAACAATTTCATATTACAATGTGAGCCATCCCAACTCAAACCAACCAACTGGTCTGTTTGCCCCTCTATGGAATGCTCAGCCAACGTCTTGATTGGCAAAACCATTTCCTCAGATTCCTGCAATCGCACAACCTGCGCCTATACTGGTTATAGATTCCACAATATCTCTGCAGAAGCTGTAACTGAGAACACTTGTGCTGTGCCGCCGACTCCGAGTGGTTCAGGAGGATCAACTGGTTCTGATTCAGGAGCGTCAAGGAGCACCTTGCAAGGCTTGTTTTGGAGTAATCTTTTCATTGTCATTCACTTTGTCCTCTTTCTTGTCTATGTTTTGTAG 1128 0.5195 MFAGKGAVWFSRAVALAAIAVVACVGLTQAQPEARFNCNSANIPTCRALISYSHPNTTTLGDIQKLFNVKHILDIVGANNLPSNATKTYAVGPNEVVKVPFPCRCSNNTGLSDRVPLYRIKKGDTLYYIATTTFAGLMKWPQIQVANNIANANNITTGDMLYIPLPCSCDEVGGKSVVHYAHLVAPQSTVEGIAEEFGTTQQILLNLNGISDPKNLQAGQILDVPLQACSSNVKNDSLDYPLLVPNATYAYTAHECVKCKCDSSNNFILQCEPSQLKPTNWSVCPSMECSANVLIGKTISSDSCNRTTCAYTGYRFHNISAEAVTENTCAVPPTPSGSGGSTGSDSGASRSTLQGLFWSNLFIVIHFVLFLVYVL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01350 375 CDD LysM 182 224 IPR018392 -
Gma05g01350 375 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 28 325 - -
Gma05g01350 375 Gene3D LysM domain 117 170 IPR036779 -
Gma05g01350 375 ProSiteProfiles LysM domain profile. 116 163 IPR018392 -
Gma05g01350 375 SUPERFAMILY LysM domain 117 165 IPR036779 -
Gma05g01350 375 Pfam LysM domain 118 164 IPR018392 -
Gma05g01350 375 Pfam LysM domain 185 225 IPR018392 -
Gma05g01350 375 ProSiteProfiles LysM domain profile. 180 224 IPR018392 -
Gma05g01350 375 SUPERFAMILY LysM domain 180 225 IPR036779 -
Gma05g01350 375 SMART LysM_2 181 225 IPR018392 -
Gma05g01350 375 SMART LysM_2 117 164 IPR018392 -
Gma05g01350 375 Gene3D LysM domain 171 238 IPR036779 -
Gma05g01350 375 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Gma05g01350 375 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 28 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01350 Gma-Chr5 35178761 35181908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01350 30 339 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 45.048 1.10e-83 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01350 - - gmx:100804190 734.947