Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00253 ATGCACGAAATTAGAGACCCTGCAATTAGGCTTTTCGGTCAGAAGATCCCTTTCCCTGAAGATGTTGTTGTTGACAAAGAAGAAAAAGAAATAGAAAGTGGCGAGGAAAGAGAACAAGAGATGGAAAAATATGAAGACCAAGGACACAAGGATGCTGGAGTTGAAAATGTTACTGAGGAAGAGCTAGAAGTTGATCCTCCTCCAAATGCTGAAGAGACTAAGAATTCAGGCTCATCCCCTGAGGCTATTGTGAACCCCAAAACACCTTCCATAGAAGAAGAAACAGAAAAATCAAAAGGTGACAAAACAGAGAAGGAACAAGGTGATGCAGCCAACTCACAAGAGAAAACCCTGAAGAAGCCAGATAAAGTGCTACCATGCCCCCGCTGCAAAAGCATGGACACTAAATTCTGTTACTACAACAACTACAATGTCAACCAGCCGCGTTATTTCTGCAAAGCCTGTCAAAGATACTGGACTGCAGGTGGCACCATGAGGAATGTTCCTGTGGGGGCAGGACGGCGAAAGAACAAGAACTCTACCTCCCATTATCGCCACATCACTATCTCTGAGGCCCTTCAAGCAGCTAGAATTGATTCTCATCTTCCACCTTTGAAAGGCAATGGTAGAGTCCTCAGCTTTGGATTAGATGCACATGCACCTATTTGTGATTCCATGGCATCTGTCAACAATCTTGGAGAGAAAAAGCCTCTCAATTGCACAAGAAATGGGTTTCATCATGGCTTTGAGGATCAAAGACTCCCCCCCGTTCCTTGCAAAAGTGGGGAAAATGGTGATGACTCTTCAACTACATCCTCCATCACAGTTTCAAGTTCCAAGGGAGAAAATAACAAAAACACCTTCCAACAACAATCAGTGCCCCAAAATCATGGTTTCCTTCCTCAACTTCCATGTATTCCTGGTGTTTCTTGGCCCTATACATGGAATTCTCCAGTTCCTCCACCTGCTATGTGTCCTTCAGGATTTCCCCTACCATTCTATCCTGCTACATTTTGGAACTGTGGCATGCCAGGGAATTGGAATGTTCCATTGTTTTCCTCACATTCATCTGCTTCAAACCTCGAGTCTCGAAGCTCCAGTCCAAATTCTCCAACTTTGGGGAAGCACTCGCGCGACGGTGACATGATTAAGCAATACTCTTTGCCTAAAGAAGAAGCTTCAAAGCCAAGAAACGGGGGTGTTTTGGTTCCCAAAACGTTGAGAATTGATGATCCAAGTGAGGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATTAAGAATGAGTCAGTGAGTGGTGGAGGTATGTTTAAGGCCTTCCAATCAAAGAAAAATGAAAAGAATCATGTTGAAGCCTCTCCATTGTTGATGGCTAACCCTGCAGCTTTATCTAGATCCCTCAATTTTCATGAAAACTCCTGA 1422 0.4388 MHEIRDPAIRLFGQKIPFPEDVVVDKEEKEIESGEEREQEMEKYEDQGHKDAGVENVTEEELEVDPPPNAEETKNSGSSPEAIVNPKTPSIEEETEKSKGDKTEKEQGDAANSQEKTLKKPDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSTSHYRHITISEALQAARIDSHLPPLKGNGRVLSFGLDAHAPICDSMASVNNLGEKKPLNCTRNGFHHGFEDQRLPPVPCKSGENGDDSSTTSSITVSSSKGENNKNTFQQQSVPQNHGFLPQLPCIPGVSWPYTWNSPVPPPAMCPSGFPLPFYPATFWNCGMPGNWNVPLFSSHSSASNLESRSSSPNSPTLGKHSRDGDMIKQYSLPKEEASKPRNGGVLVPKTLRIDDPSEAAKSSIWATLGIKNESVSGGGMFKAFQSKKNEKNHVEASPLLMANPAALSRSLNFHENS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00253 473 ProSiteProfiles Zinc finger Dof-type profile. 125 179 IPR003851 GO:0003677|GO:0006355
Gma05g00253 473 Coils Coil 24 44 - -
Gma05g00253 473 Pfam Dof domain, zinc finger 122 179 IPR003851 GO:0003677|GO:0006355
Gma05g00253 473 MobiDBLite consensus disorder prediction 357 380 - -
Gma05g00253 473 MobiDBLite consensus disorder prediction 357 374 - -
Gma05g00253 473 MobiDBLite consensus disorder prediction 263 289 - -
Gma05g00253 473 MobiDBLite consensus disorder prediction 90 123 - -
Gma05g00253 473 MobiDBLite consensus disorder prediction 20 57 - -
Gma05g00253 473 MobiDBLite consensus disorder prediction 251 289 - -
Gma05g00253 473 MobiDBLite consensus disorder prediction 71 85 - -
Gma05g00253 473 ProSitePatterns Zinc finger Dof-type signature. 127 163 IPR003851 GO:0003677|GO:0006355
Gma05g00253 473 MobiDBLite consensus disorder prediction 1 123 - -
Gma05g00253 473 PANTHER CYCLIC DOF FACTOR 2 1 472 IPR045174 GO:0003700|GO:0006355
Gma05g00253 473 PANTHER CYCLIC DOF FACTOR 1 1 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00253 Gma-Chr5 2303134 2305993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00253 1 471 C2C2-Dof Transcription Factor Family AT3G47500 49.084 6.29e-126 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma05g00253 zf-Dof 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00253 - - gmx:100817354 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00253 05 2303134 2305993 Gma17g00950 17 8101698 8105003 ECH
Gma19g00205 19 2685498 2688716 Gma05g00253 05 2303134 2305993 ECH
Gma20g00335 20 4942519 4945787 Gma05g00253 05 2303134 2305993 ECH
Gma01g00454 01 5866252 5870143 Gma05g00253 05 2303134 2305993 ECH
Gma05g00253 05 2303134 2305993 Gma05g00253 05 2303134 2305993 ECH
Gma17g00950 17 8101698 8105003 Gma05g00253 05 2303134 2305993 GST
Gma01g00454 01 5866252 5870143 Gma05g00253 05 2303134 2305993 PCT
Gma02g00994 02 10614705 10617848 Gma05g00253 05 2303134 2305993 PCT