Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02232 ATGGAAGGTTCAAAGCCTCCTCCTCCTCCTCCTCCTCCTATGTTGGAGAGAAGGGCAAGGCCTCAAAAGGATCAAGCTTTGAACTGCCCAAGGTGCAATTCAACAAACACCAAATTCTGCTACTACAACAACTATAGCCTCTCTCAGCCAAGGTACTTTTGCAAGACATGTAGAAGGTATTGGACTGAGGGTGGTTCTCTCAGAAATGTTCCTGTGGGTGGTGGCTCTAGAAAGAACAAGAGATCAACCCCGCCAGCACCACCATCAGCACCAGCACCAACAAAGAAGCTTTCTGATCTCGCAACACCAAATTTCCCTCAATCTGCTTCTCAGGACCCTAAGATCCACCAAGGCCAAGACCTTAACCTAGCATATCCACCAGCTGAGGACTACAGCACTGTCTCCAAGTTCATTGAGGTTCCTTACAGCACTGAATTAGACAAGGGTACTACTGGTCTTCATCAAAACCCTACTTCCTCATCAACAACAACATCTGCATCTTCTCAGTTGTCTGCCATGGAGCTTCTCAAGACTGGGATTGCAGCTGCTTCCTCAAGGGGTTTGAACTCCTTCATGCCAATGTATAATTCAACCCATGGGTTTCCCTTGCAGGACTTTAAGCCACCACATGGCCTTAACTTCAGCCTTGAGGGGTTTGAAAATGGTTATGGGGGTCTTCAGGGGATTCAAGAGGGTCCCACTGGTGGTGCAAGGATCTTGTTTCCTACTGTGGAGGATTTGAAGCAGCAAGTTCCAAGCACAAATGAGTTTGATCAGCAGAATAGAAGTCAAGAGGGTTCAGCTCACGGGTATTGGAATGGCATGTTAGGTGGAGGATCATGGTAG 846 0.4764 MEGSKPPPPPPPPMLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTPPAPPSAPAPTKKLSDLATPNFPQSASQDPKIHQGQDLNLAYPPAEDYSTVSKFIEVPYSTELDKGTTGLHQNPTSSSTTTSASSQLSAMELLKTGIAAASSRGLNSFMPMYNSTHGFPLQDFKPPHGLNFSLEGFENGYGGLQGIQEGPTGGARILFPTVEDLKQQVPSTNEFDQQNRSQEGSAHGYWNGMLGGGSW 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02232 281 ProSitePatterns Zinc finger Dof-type signature. 29 65 IPR003851 GO:0003677|GO:0006355
Gma04g02232 281 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 10 278 - -
Gma04g02232 281 MobiDBLite consensus disorder prediction 65 115 - -
Gma04g02232 281 MobiDBLite consensus disorder prediction 100 115 - -
Gma04g02232 281 ProSiteProfiles Zinc finger Dof-type profile. 27 81 IPR003851 GO:0003677|GO:0006355
Gma04g02232 281 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 278 IPR045174 GO:0003700|GO:0006355
Gma04g02232 281 MobiDBLite consensus disorder prediction 256 281 - -
Gma04g02232 281 MobiDBLite consensus disorder prediction 1 16 - -
Gma04g02232 281 MobiDBLite consensus disorder prediction 148 167 - -
Gma04g02232 281 Pfam Dof domain, zinc finger 24 81 IPR003851 GO:0003677|GO:0006355
Gma04g02232 281 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02232 Gma-Chr4 52707504 52709263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02232 14 281 C2C2-Dof Transcription Factor Family AT3G61850 43.836 2.08e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma04g02232 zf-Dof 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02232 - - gmx:778114 556.214