Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01780 ATGGGTTTATCTTCTTTGCACGTCTGCATGGATTCATCAGATCATTGGTTGCAGGGCACAATTCACGAGGAGTCTGGGATGGATTCTTCTTCTTCACCCTCTGGGGATATGCTTACATGCTCAAGGCCCATGATAGAGAGGAGGCTAAGACCCCCACAAGACCAAGCTCTTAAGTGCCCCAGGTGTGACTCAACCCACACCAAGTTCTGCTACTACAACAACTACAGTCTTTCTCAGCCAAGGTACTTCTGCAAGACCTGCAGAAGGTACTGGACAAAAGGAGGCACTCTTCGGAACATTCCTGTTGGTGGTGGCTGCAGAAAGAACAAAAAGGTCTCTGCCAAAAAATCCAATGACCACCAATTAGTTAACAACAATAATATTAACCAAACACGGCCCCCAAACCACCACCACCCCAAAGACCTTCAACTCTCCTCCTTCCCAGATGTGCAATTTTCTCACCTCAGCAACTTGCTTGGGACCAATGCAAACCCTAGTTTCATGGAGGGCAAATATGGAATTGGCATGATTGAGAACCCTAGGCCTATTGACTTCATGATGGAGAGCAAGCTGGAGGGCATAATTGGGAGCGGCAGTAGTTCTAGAAATTTTGATTTTTTTGGAAACAATGACATGTCTATGGGTATGGCTAGTGTTGGGCTGGGAGATATGAACGGTGCTACTACTCATCAAAATGGGTTGCCACCAAATTTATATCATCATGGTCTTTCAGCATTTGGTGGCATGTCTATGTCCCTTGATCATGGCAACAACAACAACAGTGATAATAATGGTGCTAATAGGTACTTAATGGACTCTTGCCAGCGTTTGATGCTGCCATATGATGTCAGCAATGAGGACCATAATGCCCAAATTGATGTGAAGCCAAACCCTAAACAGCTATTGTCCCTTGAATGGCAAGACCAGGGTTGCTCTGATGCGGGAAAAGACTCATTTGGGTATCTCAACGGTCCAGGATCATGGACTGGCATGATGAACGGCTATGGATCTTCCACCACACACCCTTTGGTCTAA 1035 0.4589 MGLSSLHVCMDSSDHWLQGTIHEESGMDSSSSPSGDMLTCSRPMIERRLRPPQDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSAKKSNDHQLVNNNNINQTRPPNHHHPKDLQLSSFPDVQFSHLSNLLGTNANPSFMEGKYGIGMIENPRPIDFMMESKLEGIIGSGSSSRNFDFFGNNDMSMGMASVGLGDMNGATTHQNGLPPNLYHHGLSAFGGMSMSLDHGNNNNSDNNGANRYLMDSCQRLMLPYDVSNEDHNAQIDVKPNPKQLLSLEWQDQGCSDAGKDSFGYLNGPGSWTGMMNGYGSSTTHPLV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01780 344 PANTHER - 12 338 - -
Gma04g01780 344 Pfam Dof domain, zinc finger 54 111 IPR003851 GO:0003677|GO:0006355
Gma04g01780 344 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Gma04g01780 344 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 338 IPR045174 GO:0003700|GO:0006355
Gma04g01780 344 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01780 Gma-Chr4 47637376 47639456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01780 1 344 C2C2-Dof Transcription Factor Family AT5G62940 41.147 5.46e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma04g01780 zf-Dof 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01780 - - gmx:778107 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01780 04 47637376 47639456 Gma06g01623 06 15982131 15984041 GST
Gma17g00839 17 7089162 7091156 Gma04g01780 04 47637376 47639456 PCT
Gma05g00359 05 3368554 3370676 Gma04g01780 04 47637376 47639456 PCT
Gma04g01780 04 47637376 47639456 Gma17g00839 17 7089162 7091156 PCT
Gma04g01780 04 47637376 47639456 Gma05g00359 05 3368554 3370676 PCT