Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01525 ATGCAGGAAATACACTCCATCGGCGGCGGAAGGTTCTTCGGCGGCGGCGGCGACCGGAGGCTGAGGCCGCACCACCAGAACCACCACCAGCAGCCGCCGATAAAATGCCCCCGCTGCGACTCACTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCGCGCCATTTCTGCAAGAACTGCCGTCGCTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTTGGCGGCGGTTGCCGGAAATCAAAACGCTCCAACAAGCCCAAAACCACCACCTCAGCCGCCGCCACCACCAGCAGCAACAATAACAATAACAACCCTTCCTCTTCCTCGGAAACCGCTGCGGCAACCGCACCAACGCCACCACAACAACCGCCTCCGCCACTTGAGCTAGAGCATAATTCTCACTCTCACTCCAGCAGCGAAAGCTCCACTTATACCGTCGCTGCCACGGAGGCCATGTCAGCGCCGACAACGAATGCGGTGTCGAACAACAATTTATTACTTGACAACAACCGTGAGTCGAAGATGTTCGCTAACCCTAACCCCTATTTAGAGCAGAGTCGTAGTGGTGGCCTTTTCTCTGACATAGAGAGCTTCAGCAGCCTCGTCAATTTAAACAACCAAGCATTGGGGTTTGGGTTTGGGAACAATAATAGCAACATCAGCATCCTCGATGCGACGTCGTTTCGGTTTGGTGTTAGTGTTACTAATCCGCACGGGAATGATCAGGTGCTTGCGGCACCAGGTGGAGGCCATGGTCAGTGGCAACAACAACAGCAGAATCATCATGAGTTCGGTACGGCGTCGTTTCTTGATCACACCGTGCCGCTTGAGTTTTCTTCGCTGCAGCATAAAGCTGGGCATCAGGGAGGGTTTGGACCGTTGGATTGGCAACCCGGTGGGGATCAAGGTTTGTTTGATCTTCCTAACACTGTTGATCAACCTTACTGGACACACCACACTCATTGGTCTGATCAAGATAATCCTTCTTCTCTCTTTCATCTTCCCTGA 1026 0.537 MQEIHSIGGGRFFGGGGDRRLRPHHQNHHQQPPIKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPKTTTSAAATTSSNNNNNNPSSSSETAAATAPTPPQQPPPPLELEHNSHSHSSSESSTYTVAATEAMSAPTTNAVSNNNLLLDNNRESKMFANPNPYLEQSRSGGLFSDIESFSSLVNLNNQALGFGFGNNNSNISILDATSFRFGVSVTNPHGNDQVLAAPGGGHGQWQQQQQNHHEFGTASFLDHTVPLEFSSLQHKAGHQGGFGPLDWQPGGDQGLFDLPNTVDQPYWTHHTHWSDQDNPSSLFHLP 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01525 341 Pfam Dof domain, zinc finger 33 88 IPR003851 GO:0003677|GO:0006355
Gma04g01525 341 MobiDBLite consensus disorder prediction 1 35 - -
Gma04g01525 341 MobiDBLite consensus disorder prediction 78 152 - -
Gma04g01525 341 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 325 IPR045174 GO:0003700|GO:0006355
Gma04g01525 341 ProSitePatterns Zinc finger Dof-type signature. 36 72 IPR003851 GO:0003677|GO:0006355
Gma04g01525 341 PANTHER DOF ZINC FINGER PROTEIN 4 15 325 - -
Gma04g01525 341 ProSiteProfiles Zinc finger Dof-type profile. 34 88 IPR003851 GO:0003677|GO:0006355
Gma04g01525 341 MobiDBLite consensus disorder prediction 295 314 - -
Gma04g01525 341 MobiDBLite consensus disorder prediction 92 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01525 Gma-Chr4 41187381 41189095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01525 18 341 C2C2-Dof Transcription Factor Family AT5G60850 36.280 2.41e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma04g01525 zf-Dof 9.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01525 - - gmx:778116 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01525 04 41187381 41189095 Gma04g01525 04 41187381 41189095 ECH
Gma17g00772 17 6486352 6487567 Gma04g01525 04 41187381 41189095 PCT
Gma05g00172 05 1638277 1639434 Gma04g01525 04 41187381 41189095 PCT
Gma04g01525 04 41187381 41189095 Gma17g00772 17 6486352 6487567 PCT
Gma04g01525 04 41187381 41189095 Gma05g00172 05 1638277 1639434 PCT