Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01459 ATGCAATCTCAAAGTTCAGATACGTTTCCCTCTCACAATGGCAATGACCCAATTTCCTGTTATGACCCAGCATTTTACTACTACAATAGCAGGCCCTTTTCTCCCATTGACTCTGAAAGCAACCCAACATCAAAACAAGACAACAACAACAACTGTGACCTCGTTCCTTCTCCTACTCCTTTGTCCTTTTTCCACTTTCCTTCTTCTCCCTTTGAAGACACTCAAAATCAAATTTTGCTCGAACAACACCACGATTTTCTCCTTCAGTTTCACCATCAATCTCTCCCCAAAGACCCCGTGCCTCAACCGGCAGTTATCACCACCATGGATCCTTTTGTTAAAAAGAGTGACCAGATCCAAAGAAAAAGACCTGGCAAGAGAGACAGGCACAGCAAGATCAACACCGCAAGAGGGTTGAGGGATCGGAGAATGAGACTTTCCCTTGAAGTTGCAAAGAGGTTTTTCGGCCTTCAAGATATGCTGAACTTTGACAAAGCAAGCAAGACCGTGGAGTGGTTATTGAACCAAGCAAAAGTAGAAATCAACCGTTTAGTGAAAGAGAAGAAGAAGAATGATCATCATCATCAAAGTTGTAGCAGTGCTAGTTCGGAATGTGAAGAAGGTGTGTCTAGTCTTGATGAGGTTGTAGTAAGTCGAGATCAAGAACAACAACAACAACAACAACAAGAGAAGGTGGAAAAAGTTGTAAAGAGAAGGGTCAAAAACTCTAGAAAGATCAGTGCATTTGACCCTCTTGCAAAAGAGTGTAGGGAAAGGGCAAGGGAAAGAGCAAGAGAGAGGACAAGAGAAAAGATGAGAAGCCGTGGAGTTCTAGCTGAAGAATCAAAGCAATGTGGAGAGGAAACAAATCAGGATCTGATCCAATTGGGTTCTTCGAACCCCTTTGAAACCGGAGATCAAGAATCTGGTGCCAAGACAAGTCACAGTGTTGATGTGCATCCTTCTTCCTTGGACGTGATTGCTACTGAGGCTAAAGAACAAAGCTACCGTGCAGTAAAGGAGCATAATGATGATGATGATGATTCTTTGGTTGTTTTGAGCAAATGGAGCCCCTCCTTGATTTTCAATAACTCTGGATTCTCTCAAGATCACCAATTTGCAGAATTTCAGTCCTTAGGAAAGCCGTGGGAGACCTAA 1158 0.4292 MQSQSSDTFPSHNGNDPISCYDPAFYYYNSRPFSPIDSESNPTSKQDNNNNCDLVPSPTPLSFFHFPSSPFEDTQNQILLEQHHDFLLQFHHQSLPKDPVPQPAVITTMDPFVKKSDQIQRKRPGKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLNFDKASKTVEWLLNQAKVEINRLVKEKKKNDHHHQSCSSASSECEEGVSSLDEVVVSRDQEQQQQQQQEKVEKVVKRRVKNSRKISAFDPLAKECRERARERARERTREKMRSRGVLAEESKQCGEETNQDLIQLGSSNPFETGDQESGAKTSHSVDVHPSSLDVIATEAKEQSYRAVKEHNDDDDDSLVVLSKWSPSLIFNNSGFSQDHQFAEFQSLGKPWET 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01459 385 MobiDBLite consensus disorder prediction 260 321 - -
Gma04g01459 385 Pfam TCP family transcription factor 125 274 IPR017887 -
Gma04g01459 385 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 28 356 IPR005333 GO:0003700
Gma04g01459 385 ProSiteProfiles R domain profile. 254 271 IPR017888 -
Gma04g01459 385 ProSiteProfiles TCP domain profile. 126 184 IPR017887 -
Gma04g01459 385 PANTHER TRANSCRIPTION FACTOR TCP18 28 356 - -
Gma04g01459 385 MobiDBLite consensus disorder prediction 260 287 - -
Gma04g01459 385 MobiDBLite consensus disorder prediction 288 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01459 Gma-Chr4 36208683 36210461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01459 27 268 TCP Transcription Factor Family AT3G18550 34.021 3.66e-30 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gma04g01459 TCP 2.6e-45 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01901 06 21174280 21175422 Gma04g01459 04 36208683 36210461 ECH
Gma08g02386 08 23459544 23460769 Gma04g01459 04 36208683 36210461 ECH
Gma04g01459 04 36208683 36210461 Gma04g01459 04 36208683 36210461 ECH
Gma04g01459 04 36208683 36210461 Gma06g01901 06 21174280 21175422 GST