Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01173 ATGTTGATCATACACAGCGGTGATTGCAGCAAAAGAAGAATGGTTTATCAATGGTTTTTTATTATCAAATTCATGTGCCTTCTTTGCTTCGTTGCTGGTCAGAACAGTAGCAATACACAACCACTTGATTATAGATATGCTTGTTTGGACCAAACTTCTGTTCCTCCTTCTACTACATACCAAACCAATCTCGACGATTTGATCTCTTCCCTCTCATCTGATTCTGCTACCAGCAATGGTTTTGGGAATGGAACTTCAGGTATTGATGAAAACATGGTTTATGGACTCTATCTTTGTCGTGGCGATGTGAACACCAGCCTTTGCCACTCATGTGTTCAAAACTCTAGCATATTGCTCAAGCAGCACTGCCCCAACACTGCCTCAGCTATTTTGTGGTACCCCTTTTGTCTTCTGAGGTACTCAAACCAGAATTTCTTTGGCAACCTCACCTTAACGCCTAGGATTCCGATGTTTGACGCCACGCAAAATTTTACTAGTGCTGGAGAGTTTGACAGTGATGCCAGGGTTTTGATGAATGGTTTAATACAAATGGGGTCAGAGGAACCCTTGATGTTTGGGACACATATGTTCAATATAAATGGCACTCAAAGAAGGTATGGTTGGGTACAGTGCAGCAGAGATATTACAACTGAGGAATGCAGAACATGTTTGAGCAATATGCTTGAAGATGTTGAGAATTGCTGTGAGGAGAAGAAGGTGTGGCGTGTCTTTTCTCCAAGTTGTATTGTGATGTATGAAACTCAGCCATTTTTTTTGAATGGAACTTCTGAGCCAACGCCTCAGCAAGACGAAGATGGGGATAACAGAAGGTGGTTGATTATAGTAATCATTTCTGTATCTGGAGTTGTGGTAGTAGCTCTATTGTCTATCAGCACATACTACTTCTGGTGTTTGAAATGGAAAAAAGACAAACAAGCTATTCAAGAGGATGGACTAAATTCAATGTTTTCTCAAGATCAAACGGACAAGGAGGAGAGTATGAATGCTGACCTTCCTATGATGCCTCTGAGTACTATTCTAAAAAGTACAAATAATTTTTCTGATGAGCATAAACTAGGGAAAGGTGGATTTGGCCCTGTCTATAAGGGAGTTTTACCAGATGGAAGGCAAATTGCTGTTAAAAGGCTTTCAAAAACTTCTGTTCAAGGTGTGGAGGAATTCAAAAATGAAGTAATATTGATAGCAAAATTACAGCATCGCAACCTTGTGAGACTGTTGGCTTGCTGCATTGAGCAAAATGAAAAGCTTCTTGTCTATGAATTCATGCCAAATTCAAGCCTTGATTTCCACTTATTTGATATGGAGAAGGGTGAACATCTGGAATGGAAAAACCGATTAAACATTATTAATGGGATTGCTAAAGGGCTTCTATATCTACATGAAGACTCTAGGCTAAGGGTTATTCACAGAGACCTGAAAGCTAGTAACATTCTATTAGATCATGAAATGAATCCAAAAATTTCAGACTTTGGATTGGCAAGAACATTTGGAGGAGACCAGAAGCAGGCAAATACAATTAGAGTTGTGGGAACTTATGGATACATGGCTCCTGAGTATGCTATGGAAGGCTTGTTTTCAGTAAAGTCAGATGTTTTCAGCTTTGGTGTTCTTTTGTTAGAGATCATCAGTGGAAAAAGGAGTAGTAAATTCTATCTGTCAGACCAAGGCCAAAGCCTTCTCATATATGCATGGAACCTCTGGTGTGAGAGGAAAGGTTTGGAATTGATGGATCCAATAATAGAAAAGTCATGCGTACGTAGTGAAGTTCTGAAGTGTATGCACATTGGACTATTGTGTGTACAAGAAGATGCAGCAGATAGACCAAAAATGTCAAGTGTTGTTCATATGCTTGCAAGTGACACAGTGAGTCTTTCCGTCCCCACACGCCCTGCATTTTCTGTTGGAAGAGCTGTCACTGAACGCGAGTGTTCATCAAACACTTCTATGCATTACTCTGTCAATGAAGCAACAGTCTCTGAAGTGATACCAAGGTGA 2016 0.4013 MLIIHSGDCSKRRMVYQWFFIIKFMCLLCFVAGQNSSNTQPLDYRYACLDQTSVPPSTTYQTNLDDLISSLSSDSATSNGFGNGTSGIDENMVYGLYLCRGDVNTSLCHSCVQNSSILLKQHCPNTASAILWYPFCLLRYSNQNFFGNLTLTPRIPMFDATQNFTSAGEFDSDARVLMNGLIQMGSEEPLMFGTHMFNINGTQRRYGWVQCSRDITTEECRTCLSNMLEDVENCCEEKKVWRVFSPSCIVMYETQPFFLNGTSEPTPQQDEDGDNRRWLIIVIISVSGVVVVALLSISTYYFWCLKWKKDKQAIQEDGLNSMFSQDQTDKEESMNADLPMMPLSTILKSTNNFSDEHKLGKGGFGPVYKGVLPDGRQIAVKRLSKTSVQGVEEFKNEVILIAKLQHRNLVRLLACCIEQNEKLLVYEFMPNSSLDFHLFDMEKGEHLEWKNRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDHEMNPKISDFGLARTFGGDQKQANTIRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGKRSSKFYLSDQGQSLLIYAWNLWCERKGLELMDPIIEKSCVRSEVLKCMHIGLLCVQEDAADRPKMSSVVHMLASDTVSLSVPTRPAFSVGRAVTERECSSNTSMHYSVNEATVSEVIPR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01173 671 Gene3D - 156 257 IPR038408 -
Gma04g01173 671 Gene3D - 42 145 IPR038408 -
Gma04g01173 671 ProSiteProfiles Gnk2-homologous domain profile. 152 257 IPR002902 -
Gma04g01173 671 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 36 668 - -
Gma04g01173 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Gma04g01173 671 Pfam Protein tyrosine and serine/threonine kinase 356 624 IPR001245 GO:0004672|GO:0006468
Gma04g01173 671 ProSiteProfiles Gnk2-homologous domain profile. 42 145 IPR002902 -
Gma04g01173 671 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 36 668 - -
Gma04g01173 671 ProSiteProfiles Protein kinase domain profile. 353 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g01173 671 SMART serkin_6 353 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g01173 671 Gene3D Transferase(Phosphotransferase) domain 1 429 632 - -
Gma04g01173 671 CDD STKc_IRAK 359 624 - -
Gma04g01173 671 Pfam Salt stress response/antifungal 162 254 IPR002902 -
Gma04g01173 671 Pfam Salt stress response/antifungal 53 143 IPR002902 -
Gma04g01173 671 Gene3D Phosphorylase Kinase; domain 1 314 428 - -
Gma04g01173 671 SUPERFAMILY Protein kinase-like (PK-like) 337 641 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01173 Gma-Chr4 16875081 16879264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01173 19 671 Receptor kinase-like Gene Family AT4G05200 40.410 3.78e-170 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma04g01173 PK_Tyr_Ser-Thr 1.4e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01173 04 16875081 16879264 Gma15g02175 15 44494259 44516461 PCT
Gma15g02175 15 44494259 44516461 Gma04g01173 04 16875081 16879264 PCT