Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01155 ATGAGTCAAATGACAAATGAGATTAACTACAATGTGCACTGCAATGATCAAACTGGGTCACAGTTAAATGATGAGGGCAATGGAGTAGGTATGGTTCTGAAGAAAGGGCCATGGACAGCTGCTGAAGATGTTCTTTTGGTGAACTATGTCCAGAAGCATGGAGAGGGGAACTGGAATGCTGTTCAGAAGTACTCAGGCCTGTCTCGTTGTGGAAAAAGTTGTAGACTGCGATGGGCCAATCACCTAAGGCCAAATTTAAAGAAAGGAGCATTTACCGCAGAAGAGGAACGGATGATTGCTGAACTCCACGCCAAAATGGGAAACAAATGGGCACGCATGGCGGCGCACTTGCATGGTCGTACAGATAACGAAATAAAAAATTACTGGAACACTCGGATGAAGAGGCGGCAACGGGCTGGCTTGCCACTTTATCCTCCCGAGGTACTTTTGCAAGCATTTCAAGAGAGAAAGCATGGCCAAGGTACTGGTGAAATTAGTAATGGTGATGGAGGGCATCATGATTTCTTGAAGAAAAACAATTATGAGATACATGATGCAATATTTGACAGTCTGAAGGAAAATCAAGGAATCTTACCTTTTTTGCCTGACCTTCCTGCTATTTCTGCTAATAGCTTTCTGCCAAATTGTCTTGGTTCTCCTCCATATTGTAATTTTTTGCCATCAACATTACCTAACCATGATCATTTTCAAGAGTCAACCATGTCTTTTATTGGTTCCAGTGAATTGAACAGCAATGAGTTTTATCCATTTGACCGTATTAAGGATAATAATTCTGATAAGATTTCAGAATCATTTGGATTGTATTCTCCCCTTGATCGTGGTGCCTCCTCACATGGCTCAATTTGTTACAGCCATTCACTATCGAATGGCAATTCCTCTACTTCTAAGCTGATTTCTGAGGCTGCAAAGTCAGAGCTCCCTTCACTCCAAATTCCAGAAACCGAATTTGGTTGTTGGGGTACCTCTCCCCCACCTCCATTGAATGAGTCTCTTGATGTTTTCATTCATTCTCCTCAACCACCTAATGCACTAGACTCAGGTTCTTCACCACTTAATAGTGGCTTGCTTGATGCATTACTTTATCAAGCAAATACTCTTGGTTGTTCAAAGAATAATTCTTCTGACAAGAGTTTAAATTCTTCAATTGCAACTCCTGGTGACAGAGCTGAGAGTTCTGCTTTGAACATGTATGAGACAGAATGGGAGGATTATGCTGACCCTTTATCTCCCTTTGGAGCAACTTCAATCCTGAATGAGCATCCTGTTGTTAGCACCAATGGAAACTCATGGGATGATTGGGAACTTTTTCAGACCTTTAGTGCAAATTCTGCAGGCAACAATGAGAGATTGCAGTCAGTTGACCAGGTTTGGGCCCCTAAGAGTGGAAATCAATCCATGTCTCTGTTGAATCTCACTCTGCCAGATGTCTTGATAACTTCAGATTGGCACGAACTGTATTCTGACCACGATAGCATGAACCAAGCTGTCATGACTGAAGCTAGTGATGATATCAGTGGACAGTAA 1545 0.4214 MSQMTNEINYNVHCNDQTGSQLNDEGNGVGMVLKKGPWTAAEDVLLVNYVQKHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEERMIAELHAKMGNKWARMAAHLHGRTDNEIKNYWNTRMKRRQRAGLPLYPPEVLLQAFQERKHGQGTGEISNGDGGHHDFLKKNNYEIHDAIFDSLKENQGILPFLPDLPAISANSFLPNCLGSPPYCNFLPSTLPNHDHFQESTMSFIGSSELNSNEFYPFDRIKDNNSDKISESFGLYSPLDRGASSHGSICYSHSLSNGNSSTSKLISEAAKSELPSLQIPETEFGCWGTSPPPPLNESLDVFIHSPQPPNALDSGSSPLNSGLLDALLYQANTLGCSKNNSSDKSLNSSIATPGDRAESSALNMYETEWEDYADPLSPFGATSILNEHPVVSTNGNSWDDWELFQTFSANSAGNNERLQSVDQVWAPKSGNQSMSLLNLTLPDVLITSDWHELYSDHDSMNQAVMTEASDDISGQ 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01155 514 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Gma04g01155 514 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Gma04g01155 514 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Gma04g01155 514 Gene3D - 90 136 - -
Gma04g01155 514 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Gma04g01155 514 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 510 - -
Gma04g01155 514 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Gma04g01155 514 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 510 - -
Gma04g01155 514 Gene3D - 34 87 - -
Gma04g01155 514 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Gma04g01155 514 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Gma04g01155 514 SMART sant 87 135 IPR001005 -
Gma04g01155 514 SMART sant 34 84 IPR001005 -
Gma04g01155 514 CDD SANT 37 82 IPR001005 -
Gma04g01155 514 CDD SANT 90 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01155 Gma-Chr4 16454365 16457691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01155 30 511 MYB Transcription Factor Family AT5G06100 40.200 6.71e-104 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma04g01155 Myb_DNA-binding 5.6e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01155 04 16454365 16457691 Gma06g02777 06 51607124 51610554 GST
Gma04g01155 04 16454365 16457691 Gma13g01660 13 31464941 31475364 PCT
Gma04g01155 04 16454365 16457691 Gma15g02165 15 44222205 44224929 PCT
Gma13g01660 13 31464941 31475364 Gma04g01155 04 16454365 16457691 PCT
Gma15g02165 15 44222205 44224929 Gma04g01155 04 16454365 16457691 PCT