Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01153 ATGGAAGAAGGGTTAGGGCAAAACTCAGTTCCTCCTCATGGTCCCATTGATAAGTCCAAGATTCTGGATATTAAACCTCTGAGGAGTTTGATTCCTATTTACTCAATGTCTTCTCAAGCTCCACCTGCTGGCCAGTATCCTTCTGGGTTTTCTCCGTTTTTCCCATTTGGTGCACCTCAGCAAACTCCAACTGGGGTGACGACAAGGGGTGCTGCCACACCTGCTCCATTAAGGGCATATAAGAACCCACTAGGGGCAGGAGACTCTAGTTCAACAATGAACGGGTTCAATGGTCAAGATACTTCTGGGAAGAAAAAACGTGGATCACCGTCGCGCCACACCAAATCATCTGTAAATAAGCCTAAGAAAAGTCAAGAGCCACCTGCTGATTTAAGTGGCTTAGTTGGTATTAGCCCTGCCCAAAGAGAAGATGGTAGCCGTGAAGTGGTTAATATTGTGCTCATGGCGTATGATGCACTTCGGAGAAGGCTCTGCCAACTTGAAGAGGCAAAGGAATTGAGCTCAGGTTCGATCAAGCGTGCAGATTTGAAAGCTTGCAATACTTTGATGACCAGAGGAATTCGGACAAACATGAGGAAGAGAATAGGAGCAGTTCCTGGGATTGAGATTGGTGACATTTTTTATTTCCGAATGGAATTGTGTATTGTGGGCTTGCATGCTCCCTCCATGGGTGGAATTGATGCCTTGCATATCAGGGGTGAGTTTGAGGAGGAAACTCTGGCTGTGTGCATTGTTTCGTCAGGAGAATATGACGATGATGCTGAGGATAGTGATGTTATAATTTATACTGGTCAGGGTGGGAACTTCTTCATGAATAAAGATAAGCACACAACTGACCAGAAGCTTCAAAGGGGTAATCTTGCTTTGGATAGGAGTTCGCGACAACACAATGAAGTAAGAGTCATCCGGGGCATGAGAGATGGTGTGAATCCAAATAATAAAATCTATGTCTATGATGGTCTTTATAAAATCCAAGATTCATGGATAGAAAAAGCAAAAGGTGGCGGTGGTGTATTTAAGTATAAGTTGGTGAGAATACCTGGTCAATCTAGTGCCTTTGCTGTTTGGAAATCAATTCAGAAGTGGAAATCTGGCTCCCCTTCAAGGACTGGACTTATTCTTGCAGACCTTTCCAATGGAGCTGAGGGTATTCCTGTCTCACTTGTCAATGAGGTCAATAATGTGAAGGCACCTACTTTTTTCAATTATTTCCATTCTCTTAGACATCCAAAATCATTCAGTTTAATGCAGCCTTCACATGGGTGCACCTGCATTAAAGCATGTGTCCCAGGTGATTTGAACTGCTCTTGCATTAGGAGAAATGAAGGTGATTTCCCATACACTGGCAATGGCATTCTCGTGAGCCGGAAGCCATTGGTTCATGAATGTGGCCCCACATGTCAGTGTTTTCCTAACTGCAAAAATCGAGTGTCGCAAACTGGTTTAAAGCACCCCATGGAAGTGTTCAGAACGAAGGATAGAGGGTGGGGTCTTCGATCGCTGGATCCTATTCGTGCTGGTACTTTTATTTGTGAATATGCAGGAGAAGTTGTTGGCAGAGGCAAGGTAAGTCAGCTTGTGAAGGAAGGAGATGAGTATGTTTTTGATACAACCCGTATTTATGATCAATTCAAGTGGAATTATGAGCCTAGGCTTTTGGAAGAAATCGGTTCCAATGACTCTACTGAGGATTATGCCATGCCGTATCCTTTAATTATAACTGCCAAGAATATTGGGAATGTAGCTAGATTCATGAACCATAGTTGCTCCCCAAATGTTTTCTGGCAGCCTGTCGTGTATGAAGAGAACAACCAATCATACCTCCATGTTGCATTTTTTGCACTCAGACACATTCCGCCAATGACTGAGTTAACATATGATTATGGACTTGCCCAATCTGATCATGCCGAAGGTAGCAGTGCAGCCAAAGGGAGAAAGAAATGCTTATGCGGATCATCAAAATGCCGTGGTTCTTTTGGTTAG 2004 0.4366 MEEGLGQNSVPPHGPIDKSKILDIKPLRSLIPIYSMSSQAPPAGQYPSGFSPFFPFGAPQQTPTGVTTRGAATPAPLRAYKNPLGAGDSSSTMNGFNGQDTSGKKKRGSPSRHTKSSVNKPKKSQEPPADLSGLVGISPAQREDGSREVVNIVLMAYDALRRRLCQLEEAKELSSGSIKRADLKACNTLMTRGIRTNMRKRIGAVPGIEIGDIFYFRMELCIVGLHAPSMGGIDALHIRGEFEEETLAVCIVSSGEYDDDAEDSDVIIYTGQGGNFFMNKDKHTTDQKLQRGNLALDRSSRQHNEVRVIRGMRDGVNPNNKIYVYDGLYKIQDSWIEKAKGGGGVFKYKLVRIPGQSSAFAVWKSIQKWKSGSPSRTGLILADLSNGAEGIPVSLVNEVNNVKAPTFFNYFHSLRHPKSFSLMQPSHGCTCIKACVPGDLNCSCIRRNEGDFPYTGNGILVSRKPLVHECGPTCQCFPNCKNRVSQTGLKHPMEVFRTKDRGWGLRSLDPIRAGTFICEYAGEVVGRGKVSQLVKEGDEYVFDTTRIYDQFKWNYEPRLLEEIGSNDSTEDYAMPYPLIITAKNIGNVARFMNHSCSPNVFWQPVVYEENNQSYLHVAFFALRHIPPMTELTYDYGLAQSDHAEGSSAAKGRKKCLCGSSKCRGSFG 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01153 667 Pfam SET domain 502 636 IPR001214 GO:0005515
Gma04g01153 667 MobiDBLite consensus disorder prediction 51 140 - -
Gma04g01153 667 SUPERFAMILY PUA domain-like 185 373 IPR015947 -
Gma04g01153 667 ProSiteProfiles Post-SET domain profile. 651 667 IPR003616 -
Gma04g01153 667 MobiDBLite consensus disorder prediction 85 104 - -
Gma04g01153 667 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 665 - -
Gma04g01153 667 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 665 - -
Gma04g01153 667 ProSiteProfiles Pre-SET domain profile. 427 488 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gma04g01153 667 Gene3D SET domain 373 666 IPR046341 -
Gma04g01153 667 Pfam Pre-SET motif 385 483 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gma04g01153 667 ProSiteProfiles SET domain profile. 491 636 IPR001214 GO:0005515
Gma04g01153 667 SMART set_7 491 642 IPR001214 GO:0005515
Gma04g01153 667 Pfam SAD/SRA domain 202 356 IPR003105 -
Gma04g01153 667 SMART G9a_1 198 356 IPR003105 -
Gma04g01153 667 MobiDBLite consensus disorder prediction 55 69 - -
Gma04g01153 667 ProSiteProfiles YDG domain profile. 203 352 IPR003105 -
Gma04g01153 667 SUPERFAMILY SET domain 391 664 IPR046341 -
Gma04g01153 667 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 62 667 IPR025794 GO:0016571
Gma04g01153 667 SMART preset_2 381 475 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gma04g01153 667 Gene3D - 185 371 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01153 Gma-Chr4 16274760 16278562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01153 17 667 Su(var)3-9 homologs AT5G04940 52.193 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma04g01153 SAD_SRA 5.4e-48 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01153 04 16274760 16278562 Gma13g01655 13 31390494 31396301 PCT
Gma04g01153 04 16274760 16278562 Gma15g02153 15 43616747 43630838 PCT
Gma13g01655 13 31390494 31396301 Gma04g01153 04 16274760 16278562 PCT
Gma15g02153 15 43616747 43630838 Gma04g01153 04 16274760 16278562 PCT