Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00428 ATGTTGTGCGCTTGTTCTTCCGGGGAGCAATTCATATTCGAAGAGCCGCCGCACTCGCCGGAGTCCCTCGCCACCAGGGATTTCTCCGCCAGCGGACTCTCTTCCAGGACCGGAGAATGGGAACCTAAATTCGATGAAACTCAAGTAGAAGAAGCTGAATCTATTCTTAAAGAAGCTCTTTCCTTAAACTACGAGGAGGCTAGGGCTTTGTTGGGGAGGCTTGAATACCAGAGAGGGAACTTCGATGCTGCACTTCAAGTATTTCAGGGTATAGACATCAAGGGTTTGGCCCCAAGAATGATCAAGGCTATTGCCGAAAGAACCAAGCAAAGAAAACCGCGTTCCAAGGCAGATATCATGGTTCCGAATGTGATGTCATTGCATTCGGTTAGCCTGCTTCTAGAAGCAATTTTGCTTAAAGCAAGATCGTTGGAGGAACTTGGGCAATGCATTGAGGCTGCAAAGGAGTGCAGAATAATTCTGGATACGGTTGAATCTGCCCTTCCTAATGGAATGCCTGAGGGTATTGGTGAAGATTGTAAGTTGCAAGAGATGTTTCATATAGCATTGGAGTTGTTTCCAAGCCTTTGGATCAAGGCAGGGTTTCTAGATGAAGCTGTCACTGCATATCATCGTGCTCTTGTCAAGCCATGGAATTTGGAGCCAAGAAGGTTGGCTGCTGTACAAAAAGATTTAGCTATGATACTACTCTATGGTGGTGTTGAAGTAAGCCTACCCTCTCAGTTGCAGGTGTGGAGTAAAACTGCACCCAAGAGTAGTGTTGAAGAAGCAATACTTATGCTATTAATACTCATGAGCAAGGTGGCAATTCGGGAAATAGACTGGGATGCTGAAATAATGGATCATCTTACTTTTGCACTTTCAGTGACGGGGATGTTTGAGTTATTGGCAGATCATGTAGAGCAGATCCTTCCAGTTATTTATAGTCGAGCTGAGAGGTGGTACTTTCTTGCTCTGTGTTATAGTGCAGCAGGACATGATGAGGTAGCATTGAACCTTTTGAGGAAAGCTTGCGGCAGTTCTGAAGCAAACCATAGACCCCATTTTCCTTCATTTTTGTTTGGAGCAAAACTCTGTTCCTTAGACCCTCACCATGCTCATGAAGGCATTAACTTTTCACGTGAAGTTATTGATCTAGCTAAGCACCAAAATGAGCATTTTCTTAGTCAAGGCCATAAATTTCTTGGCATCTGCTATGGGGCTGCCGCTAGAATTTCTGTACTGGATTCTGAAAGAAGTATATTTCAAAGAGAGTCTTTGGACTCTCTAAACTATGCTGCTGTAAGTGAAAATGATGACCTGGAAGTGATATTCAGCCTTGGACTGGAAAATGCAATTCAAAGGAATCTGGATGCAGCTTACAACAACATAATGATGTCCTCAGACATGACTGTTGGCAGTTCAAGAGGTTGGCAGCTATTAGCACTCATAGTATCTGCACAGCAGCGATTTAAGGATGCTGAAACTATAGTTGATTGTGCTTTAGATGAGTCTGGTGGGATGGATCAACTTGAACTTCTAAGATTGAAAGCAGTACTTCAAATTGCTCAGCGGCAACCCAAGCAAGCAATAGAGACATATAGGATCTTGCTAGCGCTAATTCAGGCAAAAAAGGAGCTTTTGATTCAAGATAACAACATTGATCAAGGACAAACATTCAGGCATGAGGCATTAACAGAAAGGAAGCTGGAAATGGAAGCATGGCAGGATTTGGCTACTATTTATACAGATGTCGATTCCTTGCTTGATGCAAAAACTTGTGTTGACAAAGCCCAGTTGATAGAATTTTTCTCTCCAAGAAGTTGGCATATTACAGGGATGTTGCTAGAAGCTCAATCATTATACAAAGAGGCATTTGTTTCCTTTTCAGTATCATTGTCAATAGAACCAGATTACATTCCCAGTATCATTTCCACTGCAGAATTGTTGATGAAACTTGGTATGCAATCACTTCCGATTGCAAGAAGTTTTTTAATGAATGCTTTGCGATTAGAACCTACAAACCATGATGCTTGGTTCAACCTTGGATTGGTTTCAAAAATGGAAGGTTCATTACAGCAAGCAGCAGAGTTCTTTCAAGCTGCTTATGAACTGAAGCTTTCTGCTCCAGTACAAGAATTTAAATAA 2148 0.4218 MLCACSSGEQFIFEEPPHSPESLATRDFSASGLSSRTGEWEPKFDETQVEEAESILKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKGLAPRMIKAIAERTKQRKPRSKADIMVPNVMSLHSVSLLLEAILLKARSLEELGQCIEAAKECRIILDTVESALPNGMPEGIGEDCKLQEMFHIALELFPSLWIKAGFLDEAVTAYHRALVKPWNLEPRRLAAVQKDLAMILLYGGVEVSLPSQLQVWSKTAPKSSVEEAILMLLILMSKVAIREIDWDAEIMDHLTFALSVTGMFELLADHVEQILPVIYSRAERWYFLALCYSAAGHDEVALNLLRKACGSSEANHRPHFPSFLFGAKLCSLDPHHAHEGINFSREVIDLAKHQNEHFLSQGHKFLGICYGAAARISVLDSERSIFQRESLDSLNYAAVSENDDLEVIFSLGLENAIQRNLDAAYNNIMMSSDMTVGSSRGWQLLALIVSAQQRFKDAETIVDCALDESGGMDQLELLRLKAVLQIAQRQPKQAIETYRILLALIQAKKELLIQDNNIDQGQTFRHEALTERKLEMEAWQDLATIYTDVDSLLDAKTCVDKAQLIEFFSPRSWHITGMLLEAQSLYKEAFVSFSVSLSIEPDYIPSIISTAELLMKLGMQSLPIARSFLMNALRLEPTNHDAWFNLGLVSKMEGSLQQAAEFFQAAYELKLSAPVQEFK 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00428 715 Coils Coil 57 77 - -
Gma04g00428 715 Pfam Tetratricopeptide repeat 48 90 - -
Gma04g00428 715 ProSiteProfiles TPR repeat profile. 676 709 IPR019734 GO:0005515
Gma04g00428 715 SUPERFAMILY TPR-like 318 598 IPR011990 GO:0005515
Gma04g00428 715 SUPERFAMILY TPR-like 47 343 IPR011990 GO:0005515
Gma04g00428 715 PANTHER PROTEIN NPG1 1 715 IPR043376 -
Gma04g00428 715 SMART tpr_5 475 508 IPR019734 GO:0005515
Gma04g00428 715 SMART tpr_5 318 351 IPR019734 GO:0005515
Gma04g00428 715 SMART tpr_5 606 639 IPR019734 GO:0005515
Gma04g00428 715 SMART tpr_5 511 544 IPR019734 GO:0005515
Gma04g00428 715 SMART tpr_5 676 709 IPR019734 GO:0005515
Gma04g00428 715 PANTHER PROTEIN NPGR1 1 715 - -
Gma04g00428 715 SUPERFAMILY TPR-like 563 706 IPR011990 GO:0005515
Gma04g00428 715 Gene3D Tetratricopeptide repeat domain 43 413 IPR011990 GO:0005515
Gma04g00428 715 Gene3D Tetratricopeptide repeat domain 423 711 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00428 Gma-Chr4 3719509 3723129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00428 1 714 Calmodulin-binding Proteins AT1G27460 59.249 0.0 844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00428 04 3719509 3723129 Gma04g00428 04 3719509 3723129 ECH
Gma04g00428 04 3719509 3723129 Gma06g00419 06 3587798 3592154 GST
Gma17g02256 17 40404499 40409353 Gma04g00428 04 3719509 3723129 PCT
Gma14g00782 14 8116418 8119436 Gma04g00428 04 3719509 3723129 PCT
Gma04g00428 04 3719509 3723129 Gma17g02256 17 40404499 40409353 PCT
Gma04g00428 04 3719509 3723129 Gma14g00782 14 8116418 8119436 PCT