Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00399 ATGGCTTCGGCAAAGGACATGGATCGGATAAAAGGGCCATGGAGTCCTGAAGAGGACGAAGCGTTACGGAGGTTGGTTCAGACTTACGGCCCTAGGAACTGGTCCGTTATAAGCAAATCCATTCCGGGTCGGTCTGGGAAATCGTGCCGCTTGCGGTGGTGCAACCAGCTGTCTCCGGAGGTGGAGCGCCGGCCTTTCACGGCGGAGGAAGACGAGGCGATCCTGAAGGCTCACGCCAGGTTCGGGAACAAGTGGGCCACCATCGCGCGCTTCCTCAATGGCCGCACCGACAACGCCATCAAGAACCATTGGAATTCCACCCTCAAGAGGAAGTGCTCCGAGCCTCTCTCCGAGCCTCGGCCTCTGAAGAGATCCGCCACCGTTTCGGGTAGTCAATCCGGATCCGATTTGAGCGATTCGGGTTTACCCATTATTCTTGCAAGAAGCGTGAGCGTGACGGTAGCTCCCTCTAACCACCTTGCGGAAACCGCGTCTTCTTCAGTAACTGATCCTGCCACGTTATTGAGTTTGTCTCTACCGGGATTCGATTCGTGCGATGGGGCTAATAATGGGCCTGGGCCGAATCAGGGGCCCAGTTGCGGCCCGTTCCAGGAGATACCGATGCTTGGTTCCCAAAAGCAGTTGTTCAGCCAAGAGTTTATGAAGGTGATGCAAGAGATGATACGAGTGGAAGTGAGAAATTACATGTCTGTACTGGAACGTAATGGTGTGTGTATGCAAACCGATGCCATTAGGAACTCGGTGTTGGAGAGGATGGGAATTGGTAGGGTTGAATAA 798 0.5426 MASAKDMDRIKGPWSPEEDEALRRLVQTYGPRNWSVISKSIPGRSGKSCRLRWCNQLSPEVERRPFTAEEDEAILKAHARFGNKWATIARFLNGRTDNAIKNHWNSTLKRKCSEPLSEPRPLKRSATVSGSQSGSDLSDSGLPIILARSVSVTVAPSNHLAETASSSVTDPATLLSLSLPGFDSCDGANNGPGPNQGPSCGPFQEIPMLGSQKQLFSQEFMKVMQEMIRVEVRNYMSVLERNGVCMQTDAIRNSVLERMGIGRVE 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00399 265 CDD SANT 65 108 IPR001005 -
Gma04g00399 265 SMART sant 10 59 IPR001005 -
Gma04g00399 265 SMART sant 62 110 IPR001005 -
Gma04g00399 265 Gene3D - 10 62 - -
Gma04g00399 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 112 IPR017930 -
Gma04g00399 265 MobiDBLite consensus disorder prediction 111 137 - -
Gma04g00399 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 61 IPR017930 -
Gma04g00399 265 ProSiteProfiles Myb-like domain profile. 6 57 IPR001005 -
Gma04g00399 265 CDD SANT 13 55 IPR001005 -
Gma04g00399 265 Pfam Myb-like DNA-binding domain 14 71 - -
Gma04g00399 265 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 7 236 - -
Gma04g00399 265 Gene3D - 64 129 - -
Gma04g00399 265 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Gma04g00399 265 PANTHER MYB PROTEIN-RELATED 7 236 - -
Gma04g00399 265 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00399 Gma-Chr4 3451108 3452140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00399 5 265 MYB Transcription Factor Family AT4G37260 47.826 3.47e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma04g00399 Myb_DNA-bind_6 7.1e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00399 04 3451108 3452140 Gma04g00399 04 3451108 3452140 ECH
Gma17g02282 17 40739284 40741017 Gma04g00399 04 3451108 3452140 PCT
Gma14g00755 14 7763737 7765039 Gma04g00399 04 3451108 3452140 PCT
Gma04g00399 04 3451108 3452140 Gma17g02282 17 40739284 40741017 PCT
Gma04g00399 04 3451108 3452140 Gma14g00755 14 7763737 7765039 PCT