Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00396 ATGGCTTACCACCATCAAAAATCCCTTTTGGACACCCTATACTGCTCCGAAGAGCATTGGATAGGGGAAGGTGAATTTGACCAAGCAGAGGAGGAGTACGGTAACAGTAATAGCAATAGTAGCAGCACCTTAGTAAACAACTCCCCTGAGTCCTCCCCTCATTTGTTGCTCGAAAGCGACATGTTTTGGGACGAACAAGAGTTGGCATCGCTGTTGGAGAAAGAACAACACAACCCACTAAGCACTTGCTGTCTCCAAAGCAACCCTGCCTTGGAGGGTGCTCGCATAGAAGCCGTGGAGTGGATTCTCAAAGTAAACGCCCACTACTCCTTCTCTGCCCTCACCGCTGTTCTTGCTGTCAACTACTTTGACCGTTTTCTCTTCAGCTTCCGCTTTCAGAATGACATTAAGCCATGGATGACTCGGCTCGCTGCCGTCGCTTGCCTCTCCCTCGCTGCCAAAGTGGACGAGACACACGTTCCCTTTCTTATTGACCTTCAACAAGTGGAGGAGAGTAGATACTTGTTCGAAGCCAAGACGATTAAAAAGATGGAGATTTTGATCCTTTCCACTCTTGGATGGAAGATGAACCCTCCAACCTCTCTCTCTTTTCTTGATTACTTCACAAGAAGACTTGGATTGAAGGATCATCTCTTCTGGGAGTTCCTCACTAAGTCTGAAGGCGTTCTTCTCTCCCTCATTGGAGATTCGAGGTTCATGAGTTATCTACCTTCTGTGTTGGCAACTGCTACGATGATGCAAGTTCTGAAAAGCGTAGAGCCTAGTCTAGAAGCTGAATACAAGAGCCAGCTATTTGGTATTCTCAGAATCGACAAGGAGAAGGTGAATTCGTGTTGCAAGCTGATGCTGGAATTGTGGTCAGAGTTCGAGGGGAAGCAATGCATGAAACGCAAGTTTGGAATAGGGTGGATTCCTGGAAGCCCAAACGGCGTGATGGATGTGTCGTTTAGCTGTGATAGTAGCTCCAATGACTCTTGGGTCTCTTCCTCACCGGAACCATTGTCAAAGAAGAGTAGGAGTGAAAAATAG 1050 0.4714 MAYHHQKSLLDTLYCSEEHWIGEGEFDQAEEEYGNSNSNSSSTLVNNSPESSPHLLLESDMFWDEQELASLLEKEQHNPLSTCCLQSNPALEGARIEAVEWILKVNAHYSFSALTAVLAVNYFDRFLFSFRFQNDIKPWMTRLAAVACLSLAAKVDETHVPFLIDLQQVEESRYLFEAKTIKKMEILILSTLGWKMNPPTSLSFLDYFTRRLGLKDHLFWEFLTKSEGVLLSLIGDSRFMSYLPSVLATATMMQVLKSVEPSLEAEYKSQLFGILRIDKEKVNSCCKLMLELWSEFEGKQCMKRKFGIGWIPGSPNGVMDVSFSCDSSSNDSWVSSSPEPLSKKSRSEK 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00396 349 CDD CYCLIN 95 189 IPR013763 -
Gma04g00396 349 ProSitePatterns Cyclins signature. 95 126 IPR006671 -
Gma04g00396 349 Gene3D - 69 287 - -
Gma04g00396 349 Gene3D - 81 197 - -
Gma04g00396 349 MobiDBLite consensus disorder prediction 28 52 - -
Gma04g00396 349 MobiDBLite consensus disorder prediction 31 52 - -
Gma04g00396 349 Pfam Cyclin, N-terminal domain 70 197 IPR006671 -
Gma04g00396 349 PANTHER CYCLIN D3.1 PROTEIN 5 346 - -
Gma04g00396 349 PANTHER CYCLINS 5 346 IPR039361 -
Gma04g00396 349 Pfam Cyclin, C-terminal domain 199 307 IPR004367 -
Gma04g00396 349 SUPERFAMILY Cyclin-like 62 197 IPR036915 -
Gma04g00396 349 MobiDBLite consensus disorder prediction 326 349 - -
Gma04g00396 349 MobiDBLite consensus disorder prediction 326 341 - -
Gma04g00396 349 SUPERFAMILY Cyclin-like 181 295 IPR036915 -
Gma04g00396 349 SMART Cyclin_C_2 199 327 IPR004367 -
Gma04g00396 349 SMART cyclin_7 100 190 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00396 Gma-Chr4 3411468 3413268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00396 9 292 Core Cell Cycle Gene Families AT4G34160 51.408 1.38e-88 269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00396 04 3411468 3413268 Gma04g00396 04 3411468 3413268 ECH
Gma04g00396 04 3411468 3413268 Gma06g00385 06 3320825 3322570 GST
Gma17g02287 17 40803947 40806018 Gma04g00396 04 3411468 3413268 PCT
Gma14g00752 14 7699475 7701770 Gma04g00396 04 3411468 3413268 PCT
Gma04g00396 04 3411468 3413268 Gma17g02287 17 40803947 40806018 PCT
Gma04g00396 04 3411468 3413268 Gma14g00752 14 7699475 7701770 PCT